FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1319, 313 aa 1>>>pF1KE1319 313 - 313 aa - 313 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7129+/-0.000645; mu= 14.2537+/- 0.039 mean_var=70.5774+/-14.159, 0's: 0 Z-trim(111.2): 5 B-trim: 0 in 0/52 Lambda= 0.152666 statistics sampled from 12161 (12164) to 12161 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.374), width: 16 Scan time: 2.300 The best scores are: opt bits E(32554) CCDS11821.1 TYMS gene_id:7298|Hs108|chr18 ( 313) 2172 486.8 8.9e-138 >>CCDS11821.1 TYMS gene_id:7298|Hs108|chr18 (313 aa) initn: 2172 init1: 2172 opt: 2172 Z-score: 2587.0 bits: 486.8 E(32554): 8.9e-138 Smith-Waterman score: 2172; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313) 10 20 30 40 50 60 pF1KE1 MPVAGSELPRRPLPPAAQERDAEPRPPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MPVAGSELPRRPLPPAAQERDAEPRPPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 MQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 AWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 AWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 TGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEG 250 260 270 280 290 300 310 pF1KE1 YNPHPTIKMEMAV ::::::::::::: CCDS11 YNPHPTIKMEMAV 310 313 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:25:58 2016 done: Sun Nov 6 23:25:58 2016 Total Scan time: 2.300 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]