FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5602, 579 aa 1>>>pF1KE5602 579 - 579 aa - 579 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.9183+/-0.000423; mu= -10.7142+/- 0.026 mean_var=385.6714+/-81.724, 0's: 0 Z-trim(121.9): 13 B-trim: 2188 in 1/58 Lambda= 0.065308 statistics sampled from 39139 (39152) to 39139 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.459), width: 16 Scan time: 8.730 The best scores are: opt bits E(85289) NP_057342 (OMIM: 610640) YTH domain-containing fam ( 579) 3964 387.7 5.7e-107 NP_001166599 (OMIM: 610640) YTH domain-containing ( 579) 3964 387.7 5.7e-107 NP_001166299 (OMIM: 610640) YTH domain-containing ( 529) 3625 355.7 2.2e-97 NP_060268 (OMIM: 616529) YTH domain-containing fam ( 559) 1367 143.0 2.5e-33 >>NP_057342 (OMIM: 610640) YTH domain-containing family (579 aa) initn: 3964 init1: 3964 opt: 3964 Z-score: 2041.4 bits: 387.7 E(85289): 5.7e-107 Smith-Waterman score: 3964; 100.0% identity (100.0% similar) in 579 aa overlap (1-579:1-579) 10 20 30 40 50 60 pF1KE5 MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 QGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 QGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 FGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 FGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSE 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 DDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 DDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYN 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 TCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 TCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQV 490 500 510 520 530 540 550 560 570 pF1KE5 LKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK ::::::::::::::::::::::::::::::::::::::: NP_057 LKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 550 560 570 >>NP_001166599 (OMIM: 610640) YTH domain-containing fami (579 aa) initn: 3964 init1: 3964 opt: 3964 Z-score: 2041.4 bits: 387.7 E(85289): 5.7e-107 Smith-Waterman score: 3964; 100.0% identity (100.0% similar) in 579 aa overlap (1-579:1-579) 10 20 30 40 50 60 pF1KE5 MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 QGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 FGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSE 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 DDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYN 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 TCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQV 490 500 510 520 530 540 550 560 570 pF1KE5 LKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK ::::::::::::::::::::::::::::::::::::::: NP_001 LKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK 550 560 570 >>NP_001166299 (OMIM: 610640) YTH domain-containing fami (529 aa) initn: 3625 init1: 3625 opt: 3625 Z-score: 1869.3 bits: 355.7 E(85289): 2.2e-97 Smith-Waterman score: 3625; 100.0% identity (100.0% similar) in 529 aa overlap (51-579:1-529) 30 40 50 60 70 80 pF1KE5 GSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYYSPSIGFSYSLGEAAWSTGGD :::::::::::::::::::::::::::::: NP_001 MSDSYLPSYYSPSIGFSYSLGEAAWSTGGD 10 20 30 90 100 110 120 130 140 pF1KE5 TAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGFNFFPSGIDFSAWGNNSSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQHGFNFFPSGIDFSAWGNNSSQ 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE5 GQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAPGMNTIDQGMAALKLGSTEVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAPGMNTIDQGMAALKLGSTEVA 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE5 SNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWADIASKPAKQQPKLKTKNGIA 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE5 GSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNSPPVAQA 220 230 240 250 260 270 330 340 350 360 370 380 pF1KE5 SVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGS 280 290 300 310 320 330 390 400 410 420 430 440 pF1KE5 TPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNK 340 350 360 370 380 390 450 460 470 480 490 500 pF1KE5 RLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWI 400 410 420 430 440 450 510 520 530 540 550 560 pF1KE5 FVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHY 460 470 480 490 500 510 570 pF1KE5 EKRQEEEESVKKERQGRGK ::::::::::::::::::: NP_001 EKRQEEEESVKKERQGRGK 520 >>NP_060268 (OMIM: 616529) YTH domain-containing family (559 aa) initn: 2031 init1: 1192 opt: 1367 Z-score: 719.2 bits: 143.0 E(85289): 2.5e-33 Smith-Waterman score: 2514; 65.6% identity (83.8% similar) in 585 aa overlap (1-579:1-558) 10 20 30 40 50 60 pF1KE5 MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY :::.:. :: ::: :::::::.:::: ..:.::::::. :. .:.: .::: :: ::: NP_060 MSATSVDTQRTKGQDNKVQNGSLHQKDTVHDNDFEPYLTGQSNQSNSYPSMSDPYLSSYY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH ::::: :::.:: :::.:: .::::.:::::::. ::. ::.:::::.::.. . :: NP_060 PPSIGFPYSLNEAPWSTAGDPPIPYLTTYGQLSNGDHHFMHDAVFGQPGGLGNNIY--QH 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP ::::: . :::::...::::.::::.:.:.:.: ::::::...::: .: ..::.::: NP_060 RFNFFPENPAFSAWGTSGSQGQQTQSSAYGSSYTYPPSSLGGTVVDGQPGFHSDTLSKAP 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE5 GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA :::...:::..::.: .:.:.. :.:::.:.: ..:. ....:. ... ::.::: NP_060 GMNSLEQGMVGLKIG--DVSSSAVKTVGSVVSSVALTG-VLSGNGGTNVNMPVSKPTSWA 180 190 200 210 220 230 250 260 270 280 290 pF1KE5 DIASKPAKQQPKLKTKNG-IAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQP ::::::: :::.:::.: . :..::::::::::::::::::::: ::: . :. .: NP_060 AIASKPAKPQPKMKTKSGPVMGGGLPPPPIKHNMDIGTWDNKGPVPKAP---VPQQAPSP 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE5 TQGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQP-TRWVAPRNRG :..::: :: :: :::: :: :: . :. : :::::::::. NP_060 -QAAPQP--QQ------VA--------QPLPAQPPALAQPQYQSPQQPPQTRWVAPRNRN 300 310 320 330 360 370 380 390 400 410 pF1KE5 SGFGHNG---VDGNGVGQSQAGSGSTPS-EPHPVLEKLRSINNYNPKDFDWNLKHGRVFI ..::..: :.:. :. : .: .:: : :::::::.. ..::::.:.:::: ::::: NP_060 AAFGQSGGAGSDSNSPGNVQPNS--APSVESHPVLEKLKAAHSYNPKEFEWNLKSGRVFI 340 350 360 370 380 390 420 430 440 450 460 470 pF1KE5 IKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMK :::::::::::::::.:::::::::::::.:.: :..::::::::::::::::::::::: NP_060 IKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSGHFCGVAEMK 400 410 420 430 440 450 480 490 500 510 520 530 pF1KE5 SAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPL : :::.: :::::::::::.:::.:::::::::.::::::::::.::::::::::::::: NP_060 SPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPL 460 470 480 490 500 510 540 550 560 570 pF1KE5 EKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKKERQGRGK ::::::::::.::::::::::::.:::::::::: :.::::.:.: NP_060 EKAKQVLKIISSYKHTTSIFDDFAHYEKRQEEEEVVRKERQSRNKQ 520 530 540 550 579 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:02:27 2016 done: Tue Nov 8 05:02:28 2016 Total Scan time: 8.730 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]