FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3619, 194 aa 1>>>pF1KE3619 194 - 194 aa - 194 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8910+/-0.000331; mu= 15.3268+/- 0.021 mean_var=58.0371+/-11.671, 0's: 0 Z-trim(115.2): 44 B-trim: 1521 in 1/54 Lambda= 0.168353 statistics sampled from 25499 (25544) to 25499 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.299), width: 16 Scan time: 5.480 The best scores are: opt bits E(85289) NP_005784 (OMIM: 608294) nucleoside diphosphate ki ( 194) 1315 327.2 1e-89 XP_016861002 (OMIM: 608294) PREDICTED: nucleoside ( 190) 1276 317.7 7.2e-87 XP_016861003 (OMIM: 608294) PREDICTED: nucleoside ( 186) 1265 315.0 4.5e-86 NP_001295356 (OMIM: 608294) nucleoside diphosphate ( 186) 1265 315.0 4.5e-86 NP_001295355 (OMIM: 608294) nucleoside diphosphate ( 186) 1265 315.0 4.5e-86 NP_001295357 (OMIM: 608294) nucleoside diphosphate ( 186) 1265 315.0 4.5e-86 NP_001295363 (OMIM: 608294) nucleoside diphosphate ( 141) 990 248.2 4.6e-66 XP_016861007 (OMIM: 608294) PREDICTED: nucleoside ( 111) 769 194.4 5.4e-50 XP_016861001 (OMIM: 608294) PREDICTED: nucleoside ( 264) 757 191.7 8.4e-49 XP_016861006 (OMIM: 608294) PREDICTED: nucleoside ( 114) 752 190.3 9.7e-49 XP_016861005 (OMIM: 608294) PREDICTED: nucleoside ( 129) 469 121.6 5.3e-28 NP_001295359 (OMIM: 608294) nucleoside diphosphate ( 171) 469 121.7 6.7e-28 NP_001295364 (OMIM: 608294) nucleoside diphosphate ( 119) 419 109.4 2.2e-24 XP_016861000 (OMIM: 608294) PREDICTED: nucleoside ( 121) 419 109.4 2.3e-24 XP_016861004 (OMIM: 608294) PREDICTED: nucleoside ( 163) 419 109.5 2.9e-24 NP_001295362 (OMIM: 608294) nucleoside diphosphate ( 163) 419 109.5 2.9e-24 NP_001295360 (OMIM: 608294) nucleoside diphosphate ( 163) 419 109.5 2.9e-24 XP_005272156 (OMIM: 603575) PREDICTED: nucleoside ( 148) 353 93.5 1.8e-19 XP_006714779 (OMIM: 603575) PREDICTED: nucleoside ( 149) 353 93.5 1.8e-19 NP_003542 (OMIM: 603575) nucleoside diphosphate ki ( 212) 353 93.6 2.4e-19 XP_016865434 (OMIM: 603575) PREDICTED: nucleoside ( 278) 353 93.6 3e-19 NP_932076 (OMIM: 613465) nucleoside diphosphate ki ( 340) 317 84.9 1.5e-16 XP_016856588 (OMIM: 613465) PREDICTED: nucleoside ( 367) 317 84.9 1.6e-16 NP_037462 (OMIM: 613465) nucleoside diphosphate ki ( 376) 317 85.0 1.7e-16 NP_057700 (OMIM: 607421,610852) thioredoxin domain ( 588) 274 74.6 3.3e-13 XP_005245163 (OMIM: 613465) PREDICTED: nucleoside ( 252) 260 71.0 1.8e-12 XP_016856589 (OMIM: 613465) PREDICTED: nucleoside ( 252) 260 71.0 1.8e-12 NP_002504 (OMIM: 601817) nucleoside diphosphate ki ( 169) 251 68.7 5.8e-12 NP_001018147 (OMIM: 156491) nucleoside diphosphate ( 152) 239 65.8 4e-11 NP_001018148 (OMIM: 156491) nucleoside diphosphate ( 152) 239 65.8 4e-11 NP_002503 (OMIM: 156491) nucleoside diphosphate ki ( 152) 239 65.8 4e-11 NP_001018149 (OMIM: 156491) nucleoside diphosphate ( 152) 239 65.8 4e-11 NP_005000 (OMIM: 601818) nucleoside diphosphate ki ( 187) 231 63.9 1.8e-10 NP_000260 (OMIM: 156490,256700) nucleoside diphosp ( 152) 223 61.9 5.9e-10 NP_937818 (OMIM: 156490,256700) nucleoside diphosp ( 177) 223 61.9 6.7e-10 NP_001273368 (OMIM: 601818) nucleoside diphosphate ( 117) 186 52.8 2.4e-07 NP_001273365 (OMIM: 601818) nucleoside diphosphate ( 117) 186 52.8 2.4e-07 NP_001273369 (OMIM: 601818) nucleoside diphosphate ( 117) 186 52.8 2.4e-07 NP_001273367 (OMIM: 601818) nucleoside diphosphate ( 117) 186 52.8 2.4e-07 XP_005255389 (OMIM: 601817) PREDICTED: nucleoside ( 165) 184 52.4 4.5e-07 NP_001273364 (OMIM: 601818) nucleoside diphosphate ( 173) 160 46.6 2.6e-05 NP_001273362 (OMIM: 601818) nucleoside diphosphate ( 153) 127 38.6 0.0062 NP_001185611 (OMIM: 156491) nucleoside diphosphate ( 82) 123 37.4 0.0072 >>NP_005784 (OMIM: 608294) nucleoside diphosphate kinase (194 aa) initn: 1315 init1: 1315 opt: 1315 Z-score: 1731.6 bits: 327.2 E(85289): 1e-89 Smith-Waterman score: 1315; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194) 10 20 30 40 50 60 pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG 130 140 150 160 170 180 190 pF1KE3 GVHYVAGTGGLGPA :::::::::::::: NP_005 GVHYVAGTGGLGPA 190 >>XP_016861002 (OMIM: 608294) PREDICTED: nucleoside diph (190 aa) initn: 1276 init1: 1276 opt: 1276 Z-score: 1680.5 bits: 317.7 E(85289): 7.2e-87 Smith-Waterman score: 1276; 100.0% identity (100.0% similar) in 188 aa overlap (7-194:3-190) 10 20 30 40 50 60 pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR :::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MRSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG 120 130 140 150 160 170 190 pF1KE3 GVHYVAGTGGLGPA :::::::::::::: XP_016 GVHYVAGTGGLGPA 180 190 >>XP_016861003 (OMIM: 608294) PREDICTED: nucleoside diph (186 aa) initn: 1265 init1: 1265 opt: 1265 Z-score: 1666.2 bits: 315.0 E(85289): 4.5e-86 Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 186 aa overlap (9-194:1-186) 10 20 30 40 50 60 pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR :::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG 120 130 140 150 160 170 190 pF1KE3 GVHYVAGTGGLGPA :::::::::::::: XP_016 GVHYVAGTGGLGPA 180 >>NP_001295356 (OMIM: 608294) nucleoside diphosphate kin (186 aa) initn: 1265 init1: 1265 opt: 1265 Z-score: 1666.2 bits: 315.0 E(85289): 4.5e-86 Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 186 aa overlap (9-194:1-186) 10 20 30 40 50 60 pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG 120 130 140 150 160 170 190 pF1KE3 GVHYVAGTGGLGPA :::::::::::::: NP_001 GVHYVAGTGGLGPA 180 >>NP_001295355 (OMIM: 608294) nucleoside diphosphate kin (186 aa) initn: 1265 init1: 1265 opt: 1265 Z-score: 1666.2 bits: 315.0 E(85289): 4.5e-86 Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 186 aa overlap (9-194:1-186) 10 20 30 40 50 60 pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG 120 130 140 150 160 170 190 pF1KE3 GVHYVAGTGGLGPA :::::::::::::: NP_001 GVHYVAGTGGLGPA 180 >>NP_001295357 (OMIM: 608294) nucleoside diphosphate kin (186 aa) initn: 1265 init1: 1265 opt: 1265 Z-score: 1666.2 bits: 315.0 E(85289): 4.5e-86 Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 186 aa overlap (9-194:1-186) 10 20 30 40 50 60 pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG 120 130 140 150 160 170 190 pF1KE3 GVHYVAGTGGLGPA :::::::::::::: NP_001 GVHYVAGTGGLGPA 180 >>NP_001295363 (OMIM: 608294) nucleoside diphosphate kin (141 aa) initn: 990 init1: 990 opt: 990 Z-score: 1307.0 bits: 248.2 E(85289): 4.6e-66 Smith-Waterman score: 990; 100.0% identity (100.0% similar) in 141 aa overlap (54-194:1-141) 30 40 50 60 70 80 pF1KE3 ALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWRKEDCQRFYREHEGRFFYQRLVEF :::::::::::::::::::::::::::::: NP_001 MRELLWRKEDCQRFYREHEGRFFYQRLVEF 10 20 30 90 100 110 120 130 140 pF1KE3 MASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVV 40 50 60 70 80 90 150 160 170 180 190 pF1KE3 SASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEGGVHYVAGTGGLGPA ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEGGVHYVAGTGGLGPA 100 110 120 130 140 >>XP_016861007 (OMIM: 608294) PREDICTED: nucleoside diph (111 aa) initn: 769 init1: 769 opt: 769 Z-score: 1018.5 bits: 194.4 E(85289): 5.4e-50 Smith-Waterman score: 769; 100.0% identity (100.0% similar) in 111 aa overlap (84-194:1-111) 60 70 80 90 100 110 pF1KE3 MRELLWRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVF :::::::::::::::::::::::::::::: XP_016 MASGPIRAYILAHKDAIQLWRTLMGPTRVF 10 20 30 120 130 140 150 160 170 pF1KE3 RARHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RARHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGP 40 50 60 70 80 90 180 190 pF1KE3 VCYSPEGGVHYVAGTGGLGPA ::::::::::::::::::::: XP_016 VCYSPEGGVHYVAGTGGLGPA 100 110 >>XP_016861001 (OMIM: 608294) PREDICTED: nucleoside diph (264 aa) initn: 757 init1: 757 opt: 757 Z-score: 997.2 bits: 191.7 E(85289): 8.4e-49 Smith-Waterman score: 757; 100.0% identity (100.0% similar) in 109 aa overlap (86-194:156-264) 60 70 80 90 100 110 pF1KE3 ELLWRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRA :::::::::::::::::::::::::::::: XP_016 RAAQGAPEGPCEGRRLSSVAPGGRALCRRTSGPIRAYILAHKDAIQLWRTLMGPTRVFRA 130 140 150 160 170 180 120 130 140 150 160 170 pF1KE3 RHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVC 190 200 210 220 230 240 180 190 pF1KE3 YSPEGGVHYVAGTGGLGPA ::::::::::::::::::: XP_016 YSPEGGVHYVAGTGGLGPA 250 260 >>XP_016861006 (OMIM: 608294) PREDICTED: nucleoside diph (114 aa) initn: 752 init1: 752 opt: 752 Z-score: 996.0 bits: 190.3 E(85289): 9.7e-49 Smith-Waterman score: 752; 100.0% identity (100.0% similar) in 108 aa overlap (87-194:7-114) 60 70 80 90 100 110 pF1KE3 LLWRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRAR :::::::::::::::::::::::::::::: XP_016 MTQNLGGPIRAYILAHKDAIQLWRTLMGPTRVFRAR 10 20 30 120 130 140 150 160 170 pF1KE3 HVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCY 40 50 60 70 80 90 180 190 pF1KE3 SPEGGVHYVAGTGGLGPA :::::::::::::::::: XP_016 SPEGGVHYVAGTGGLGPA 100 110 194 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:27:53 2016 done: Sun Nov 6 23:27:54 2016 Total Scan time: 5.480 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]