(Circular) (Six-base) MAPSORT of: pFN21AB6351.seq Check: 7107 from: 1 to: 5503 pFN21AB6351 5503 bp With 182 enzymes: SgfI * October 20, 2009 10:39 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3313 278 Size: 53 83 186 936 1777 2468 Fragments arranged by size: 2468 1777 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2846 1937 Size: 909 4594 Acc65I G'GTAC_C Cuts at: 2824 2824 Size: 5503 AclI AA'CG_TT Cuts at: 1563 3630 4003 1563 Size: 2067 373 3063 Fragments arranged by size: 3063 2067 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3566 4950 5218 1632 Size: 1934 1384 268 1917 Fragments arranged by size: 1934 1917 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5306 AflIII A'CryG_T Cuts at: 1203 2800 4402 5379 1203 Size: 1597 1602 977 1327 Fragments arranged by size: 1602 1597 1327 977 AgeI A'CCGG_T Cuts at: 4334 4334 Size: 5503 AhdI GACnn_n'nnGTC Cuts at: 4232 4232 Size: 5503 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5503 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5503 AlwNI CAG_nnn'CTG Cuts at: 2177 3246 4818 2177 Size: 1069 1572 2862 Fragments arranged by size: 2862 1572 1069 ApaLI G'TGCA_C Cuts at: 3560 4716 3560 Size: 1156 4347 ApoI r'AATT_y Cuts at: 1493 2812 3038 3190 5299 1493 Size: 1319 226 152 2109 1697 Fragments arranged by size: 2109 1697 1319 226 152 AseI AT'TA_AT Cuts at: 160 1032 4057 160 Size: 872 3025 1606 Fragments arranged by size: 3025 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5503 AvaI C'yCGr_G Cuts at: 1870 1943 2034 2209 2390 2828 1870 Size: 73 91 175 181 438 4545 Fragments arranged by size: 4545 438 181 175 91 73 BamHI G'GATC_C Cuts at: 2833 3200 2833 Size: 367 5136 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2166 2824 4279 618 Size: 325 217 627 379 658 1455 1842 Fragments arranged by size: 1842 1455 658 627 379 325 217 BanII G_rGCy'C Cuts at: 1391 2822 1391 Size: 1431 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2415 2520 928 Size: 971 516 105 3911 Fragments arranged by size: 3911 971 516 105 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 2346 2380 3694 3728 1903 Size: 34 409 34 1314 34 3678 Fragments arranged by size: 3678 1314 409 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2736 3395 4605 2736 Size: 659 1210 3634 Fragments arranged by size: 3634 1210 659 BclI T'GATC_A Cuts at: 1548 2428 2485 1548 Size: 880 57 4566 Fragments arranged by size: 4566 880 57 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2009 4114 136 Size: 107 122 71 631 605 337 2105 1525 Fragments arranged by size: 2105 1525 631 605 337 122 107 71 BglII A'GATC_T Cuts at: 2628 5498 2628 Size: 2870 2633 BlpI GC'TnA_GC Cuts at: 2920 2920 Size: 5503 Bme1580I G_kGCm'C Cuts at: 1790 2169 3564 4720 1790 Size: 379 1395 1156 2573 Fragments arranged by size: 2573 1395 1156 379 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5503 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3234 4192 442 Size: 416 53 83 399 24 1817 958 1753 Fragments arranged by size: 1817 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5503 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4163 1239 Size: 2924 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3628 4493 4791 3628 Size: 865 298 4340 Fragments arranged by size: 4340 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4166 882 Size: 617 2667 2219 Fragments arranged by size: 2667 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3294 493 Size: 711 2090 2702 Fragments arranged by size: 2702 2090 711 BsaBI GATnn'nnATC Cuts at: 2433 2757 5497 2433 Size: 324 2740 2439 Fragments arranged by size: 2740 2439 324 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3310 3692 4327 275 Size: 53 83 186 936 1777 382 635 1451 Fragments arranged by size: 1777 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2574 3936 4334 4608 4755 5166 2574 Size: 1362 398 274 147 411 2911 Fragments arranged by size: 2911 1362 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5278 Fragments arranged by size: 5278 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2285 2460 1186 Size: 1099 175 4229 Fragments arranged by size: 4229 1099 175 BseYI C'CCAG_C Cuts at: 2083 2149 4706 5202 2083 Size: 66 2557 496 2384 Fragments arranged by size: 2557 2384 496 66 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4930 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2953 3714 4742 1540 Size: 275 186 952 761 1028 2301 Fragments arranged by size: 2301 1028 952 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3564 3649 4720 3564 Size: 85 1071 4347 Fragments arranged by size: 4347 1071 85 BsmI GAATG_Cn' Cuts at: 3014 3107 3014 Size: 93 5410 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2169 2822 3564 3649 4720 1391 Size: 399 379 653 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 653 399 379 85 BspEI T'CCGG_A Cuts at: 5166 5166 Size: 5503 BspHI T'CATG_A Cuts at: 3392 5122 3392 Size: 1730 3773 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2145 2858 844 Size: 1301 713 3489 Fragments arranged by size: 3489 1301 713 BsrBI CCG'CTC Cuts at: 1394 1823 3390 1394 Size: 429 1567 3507 Fragments arranged by size: 3507 1567 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3998 4172 65 Size: 1183 2750 174 1396 Fragments arranged by size: 2750 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4147 4334 1700 Size: 110 2337 187 2869 Fragments arranged by size: 2869 2337 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5503 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5503 BssSI C'ACGA_G Cuts at: 3563 4575 3563 Size: 1012 4491 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5503 BstBI TT'CG_AA Cuts at: 4307 4307 Size: 5503 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5503 BstYI r'GATC_y Cuts at: 1972 2628 2833 3200 3585 3602 5054 5140 5152 Size: 656 205 367 385 17 1452 86 12 Cuts at: 5152 5498 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 656 385 367 346 205 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2593 2593 Size: 5503 BtgI C'CryG_G Cuts at: 513 1065 2308 513 Size: 552 1243 3708 Fragments arranged by size: 3708 1243 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2063 487 Size: 683 56 837 3927 Fragments arranged by size: 3927 837 683 56 BtsI GCAGTG_nn' Cuts at: 3019 3813 3833 3019 Size: 794 20 4689 Fragments arranged by size: 4689 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5503 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5468 DraI TTT'AAA Cuts at: 2807 2807 Size: 5503 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4510 809 Size: 507 3194 1802 Fragments arranged by size: 3194 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2071 2950 3839 Size: 54 1425 50 275 18 241 879 889 Cuts at: 3839 5468 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 879 275 241 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2950 1537 Size: 275 1138 4090 Fragments arranged by size: 4090 1138 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3433 1353 Size: 2080 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4090 4464 4610 387 Size: 1064 138 2501 374 146 1280 Fragments arranged by size: 2501 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 3566 4163 4950 5218 1239 Size: 393 1934 597 787 268 1524 Fragments arranged by size: 1934 1524 787 597 393 268 EcoRI G'AATT_C Cuts at: 2812 3190 2812 Size: 378 5125 FspI TGC'GCA Cuts at: 2260 4009 2260 Size: 1749 3754 HaeII r_GCGC'y Cuts at: 1678 2097 2160 2190 2356 4650 1678 Size: 419 63 30 166 2294 2531 Fragments arranged by size: 2531 2294 419 166 63 30 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2576 2608 4144 4176 4218 Size: 32 135 32 1004 32 1536 32 42 Cuts at: 4218 4250 1373 Size: 32 2626 Fragments arranged by size: 2626 1536 1004 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2847 3093 669 Size: 988 281 909 246 3079 Fragments arranged by size: 3079 988 909 281 246 HindIII A'AGCT_T Cuts at: 748 2473 748 Size: 1725 3778 HpaI GTT'AAC Cuts at: 3093 3093 Size: 5503 KpnI G_GTAC'C Cuts at: 2828 2828 Size: 5503 MfeI C'AATT_G Cuts at: 3102 3102 Size: 5503 MluI A'CGCG_T Cuts at: 5379 5379 Size: 5503 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2145 4617 4801 1305 Size: 840 2472 184 2007 Fragments arranged by size: 2472 2007 840 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3681 Fragments arranged by size: 3681 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3461 3820 3979 518 Size: 648 2295 359 159 2042 Fragments arranged by size: 2295 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2024 2149 2310 2919 3596 4744 4989 1606 Size: 418 125 161 609 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 609 418 245 161 125 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4951 NdeI CA'TA_TG Cuts at: 387 387 Size: 5503 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5503 NotI GC'GGCC_GC Cuts at: 2950 2950 Size: 5503 NruI TCG'CGA Cuts at: 2048 2048 Size: 5503 NspI r_CATG'y Cuts at: 1132 1229 2371 2861 4406 1132 Size: 97 1142 490 1545 2229 Fragments arranged by size: 2229 1545 1142 490 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5503 PciI A'CATG_T Cuts at: 4402 4402 Size: 5503 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5503 PmeI GTTT'AAAC Cuts at: 2807 2807 Size: 5503 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3572 3604 5085 5117 3572 Size: 32 1481 32 3958 Fragments arranged by size: 3958 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5503 PsiI TTA'TAA Cuts at: 3073 3073 Size: 5503 PstI C_TGCA'G Cuts at: 830 2182 2348 2855 830 Size: 1352 166 507 3478 Fragments arranged by size: 3478 1352 507 166 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5503 SacII CC_GC'GG Cuts at: 2311 2311 Size: 5503 SalI G'TCGA_C Cuts at: 1936 2845 1936 Size: 909 4594 SbfI CC_TGCA'GG Cuts at: 2348 2855 2348 Size: 507 4996 ScaI AGT'ACT Cuts at: 2291 3751 5463 2291 Size: 1460 1712 2331 Fragments arranged by size: 2331 1712 1460 SfcI C'TryA_G Cuts at: 826 1045 2178 2344 2851 3986 4667 4858 826 Size: 219 1133 166 507 1135 681 191 1471 Fragments arranged by size: 1471 1135 1133 681 507 219 191 166 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5503 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5503 SmaI CCC'GGG Cuts at: 1872 2036 2211 2392 2830 1872 Size: 164 175 181 438 4545 Fragments arranged by size: 4545 438 181 175 164 SmlI C'TyrA_G Cuts at: 820 1017 1943 3607 4508 4770 820 Size: 197 926 1664 901 262 1553 Fragments arranged by size: 1664 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3294 493 Size: 2801 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5503 SphI G_CATG'C Cuts at: 1132 2371 2861 1132 Size: 1239 490 3774 Fragments arranged by size: 3774 1239 490 SspI AAT'ATT Cuts at: 5 52 2703 3427 5 Size: 47 2651 724 2081 Fragments arranged by size: 2651 2081 724 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5503 StyI C'CwwG_G Cuts at: 513 1065 2496 2942 513 Size: 552 1431 446 3074 Fragments arranged by size: 3074 1431 552 446 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2184 3530 3547 3700 3885 4330 325 Size: 1255 604 1346 17 153 185 445 1498 Fragments arranged by size: 1498 1346 1255 604 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2289 3749 5461 Size: 274 80 33 51 1443 312 1460 1712 Cuts at: 5461 96 Size: 138 Fragments arranged by size: 1712 1460 1443 312 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2258 2290 2403 2435 2606 2638 5463 5495 2258 Size: 32 113 32 171 32 2825 32 2266 Fragments arranged by size: 2825 2266 171 113 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5503 XbaI T'CTAG_A Cuts at: 2839 2839 Size: 5503 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2011 2011 Size: 5503 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5503 XmaI C'CCGG_G Cuts at: 1870 2034 2209 2390 2828 1870 Size: 164 175 181 438 4545 Fragments arranged by size: 4545 438 181 175 164 XmnI GAAnn'nnTTC Cuts at: 3632 3632 Size: 5503 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3311 276 Size: 53 83 186 936 1777 2468 Fragments arranged by size: 2468 1777 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NruI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SacII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SanDI SapI SexAI SfiI SfoI SrfI SwaI