FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6125, 176 aa 1>>>pF1KE6125 176 - 176 aa - 176 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0496+/-0.000322; mu= 13.3702+/- 0.020 mean_var=58.9660+/-12.359, 0's: 0 Z-trim(115.8): 9 B-trim: 0 in 0/52 Lambda= 0.167022 statistics sampled from 26527 (26536) to 26527 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.311), width: 16 Scan time: 4.240 The best scores are: opt bits E(85289) NP_002428 (OMIM: 137960,256810) protein Mpv17 [Hom ( 176) 1222 302.4 2.5e-82 XP_005264383 (OMIM: 137960,256810) PREDICTED: prot ( 176) 1222 302.4 2.5e-82 XP_016859639 (OMIM: 137960,256810) PREDICTED: prot ( 170) 1075 266.9 1.1e-71 XP_006712084 (OMIM: 137960,256810) PREDICTED: prot ( 160) 1055 262.1 3e-70 XP_016859640 (OMIM: 137960,256810) PREDICTED: prot ( 160) 1055 262.1 3e-70 XP_016859641 (OMIM: 137960,256810) PREDICTED: prot ( 123) 870 217.5 6.3e-57 NP_116072 (OMIM: 616133) mpv17-like protein 2 prec ( 206) 265 71.8 7.5e-13 >>NP_002428 (OMIM: 137960,256810) protein Mpv17 [Homo sa (176 aa) initn: 1222 init1: 1222 opt: 1222 Z-score: 1599.1 bits: 302.4 E(85289): 2.5e-82 Smith-Waterman score: 1222; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176) 10 20 30 40 50 60 pF1KE6 MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 FVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 FVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNW 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 AKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 130 140 150 160 170 >>XP_005264383 (OMIM: 137960,256810) PREDICTED: protein (176 aa) initn: 1222 init1: 1222 opt: 1222 Z-score: 1599.1 bits: 302.4 E(85289): 2.5e-82 Smith-Waterman score: 1222; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176) 10 20 30 40 50 60 pF1KE6 MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 FVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 FVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNW 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 AKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 130 140 150 160 170 >>XP_016859639 (OMIM: 137960,256810) PREDICTED: protein (170 aa) initn: 1082 init1: 1063 opt: 1075 Z-score: 1407.9 bits: 266.9 E(85289): 1.1e-71 Smith-Waterman score: 1075; 92.9% identity (94.1% similar) in 170 aa overlap (11-176:1-170) 10 20 30 40 50 pF1KE6 MALWRAYQRALAAHPWKVQ----VLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVS .:::: . : ::::::::::::::::::::::::::::::::: XP_016 MAAHPRRCPDNTCVPCIGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVS 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 LGCGFVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LGCGFVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QDNWAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QDNWAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 120 130 140 150 160 170 >>XP_006712084 (OMIM: 137960,256810) PREDICTED: protein (160 aa) initn: 1055 init1: 1055 opt: 1055 Z-score: 1382.2 bits: 262.1 E(85289): 3e-70 Smith-Waterman score: 1055; 100.0% identity (100.0% similar) in 152 aa overlap (25-176:9-160) 10 20 30 40 50 60 pF1KE6 MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCG :::::::::::::::::::::::::::::::::::: XP_006 MKLKSHKRSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCG 10 20 30 40 70 80 90 100 110 120 pF1KE6 FVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNW 50 60 70 80 90 100 130 140 150 160 170 pF1KE6 AKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 AKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 110 120 130 140 150 160 >>XP_016859640 (OMIM: 137960,256810) PREDICTED: protein (160 aa) initn: 1055 init1: 1055 opt: 1055 Z-score: 1382.2 bits: 262.1 E(85289): 3e-70 Smith-Waterman score: 1055; 100.0% identity (100.0% similar) in 152 aa overlap (25-176:9-160) 10 20 30 40 50 60 pF1KE6 MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCG :::::::::::::::::::::::::::::::::::: XP_016 MKLKSHKRSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCG 10 20 30 40 70 80 90 100 110 120 pF1KE6 FVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNW 50 60 70 80 90 100 130 140 150 160 170 pF1KE6 AKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 110 120 130 140 150 160 >>XP_016859641 (OMIM: 137960,256810) PREDICTED: protein (123 aa) initn: 870 init1: 870 opt: 870 Z-score: 1143.0 bits: 217.5 E(85289): 6.3e-57 Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 123 aa overlap (54-176:1-123) 30 40 50 60 70 80 pF1KE6 GSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCGFVGPVVGGWYKVLDRFIPGTTKV :::::::::::::::::::::::::::::: XP_016 MVSLGCGFVGPVVGGWYKVLDRFIPGTTKV 10 20 30 90 100 110 120 130 140 pF1KE6 DALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNWAKLQRDYPDALITNYYLWPAVQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNWAKLQRDYPDALITNYYLWPAVQL 40 50 60 70 80 90 150 160 170 pF1KE6 ANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL ::::::::::::::::::::::::::::::::: XP_016 ANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 100 110 120 >>NP_116072 (OMIM: 616133) mpv17-like protein 2 precurso (206 aa) initn: 234 init1: 160 opt: 265 Z-score: 351.8 bits: 71.8 E(85289): 7.5e-13 Smith-Waterman score: 273; 29.7% identity (62.2% similar) in 185 aa overlap (4-175:6-188) 10 20 30 40 pF1KE6 MALWRAYQRALAAHPWKVQ--------VLTAGSLMGLGDIISQQL-VERRGLQEHQRG :: .: :.: : .: :.::. :: . :. .. : : . NP_116 MARGGWRRLRRLLSAGQLLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQVFDPR 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE6 RTLTMVSLGCGFVGPVVGGWYKVLDRFIPGTTKV---DALKKMLLDQGGFAPCFLGCFLP :. .: ..::. .:: . :: :::..:.. ..:::.:.:: .: .:: . NP_116 RSASMFAVGCS-MGPFLHYWYLSLDRLFPASGLRGFPNVLKKVLVDQLVASP-LLGVWYF 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 L-VGALNGLSAQDNWAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIW : .: :.: .. .. .:.. . . ... .:::.:..:: .:: ..:.. .. ... : NP_116 LGLGCLEGQTVGESCQELREKFWEFYKADWCVWPAAQFVNFLFVPPQFRVTYINGLTLGW 120 130 140 150 160 170 170 pF1KE6 NSYLSWKAHRL ..:::. .: NP_116 DTYLSYLKYRSPVPLTPPGCVALDTRAD 180 190 200 176 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:40:08 2016 done: Tue Nov 8 09:40:09 2016 Total Scan time: 4.240 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]