FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6125, 176 aa 1>>>pF1KE6125 176 - 176 aa - 176 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3298+/-0.000674; mu= 11.8011+/- 0.040 mean_var=56.7224+/-11.522, 0's: 0 Z-trim(109.4): 13 B-trim: 0 in 0/49 Lambda= 0.170293 statistics sampled from 10852 (10858) to 10852 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.334), width: 16 Scan time: 1.480 The best scores are: opt bits E(32554) CCDS1748.1 MPV17 gene_id:4358|Hs108|chr2 ( 176) 1222 307.9 2.1e-84 CCDS45421.1 MPV17L gene_id:255027|Hs108|chr16 ( 196) 277 75.7 1.8e-14 CCDS9279.1 PXMP2 gene_id:5827|Hs108|chr12 ( 195) 267 73.3 9.8e-14 CCDS42522.1 MPV17L2 gene_id:84769|Hs108|chr19 ( 206) 265 72.8 1.4e-13 >>CCDS1748.1 MPV17 gene_id:4358|Hs108|chr2 (176 aa) initn: 1222 init1: 1222 opt: 1222 Z-score: 1628.8 bits: 307.9 E(32554): 2.1e-84 Smith-Waterman score: 1222; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176) 10 20 30 40 50 60 pF1KE6 MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 FVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 FVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNW 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 AKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 AKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL 130 140 150 160 170 >>CCDS45421.1 MPV17L gene_id:255027|Hs108|chr16 (196 aa) initn: 226 init1: 94 opt: 277 Z-score: 373.3 bits: 75.7 E(32554): 1.8e-14 Smith-Waterman score: 277; 30.7% identity (60.8% similar) in 166 aa overlap (4-169:5-164) 10 20 30 40 50 pF1KE6 MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGC : : .:: ::: ..:: :::.. :: ..:.: :.. .. : . .:.. CCDS45 MAGWWPALSRAARRHPWPTNVLLYGSLVSAGDALQQRLQGREANWRQTRRVATLVVTFHA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 GFVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDN .: . : : ..:.: .:: . : :.: :: :: .. : .. :.: .: CCDS45 NF-NYV---WLRLLERALPGRAPHALLAKLLCDQVVGAPIAVSAFYVGMSILQG--KDDI 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 WAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL . :.. . .. ... . :: :::.:: :::...: : . . .: ... CCDS45 FLDLKQKFWNTYLSGLMYWPFVQLTNFSLVPVQWRTAYAGVCGFLWATFICFSQQSGDGT 120 130 140 150 160 170 CCDS45 FKSAFTILYTKGTSATEGYPKK 180 190 >>CCDS9279.1 PXMP2 gene_id:5827|Hs108|chr12 (195 aa) initn: 255 init1: 207 opt: 267 Z-score: 360.1 bits: 73.3 E(32554): 9.8e-14 Smith-Waterman score: 267; 29.9% identity (65.2% similar) in 164 aa overlap (11-170:29-191) 10 20 30 40 pF1KE6 MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRG : .: ... :.: : .::....: ..:.. CCDS92 MAPAASRLRAEAGLGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQ-MIEKKR 10 20 30 40 50 50 60 70 80 90 pF1KE6 LQEHQR----GRTLTMVSLGCGFVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAP .:..: : : .. : :.::. .: ....:: . . .:...:::. ::: CCDS92 KKENSRSLDVGGPLRYAVYGFFFTGPLSHFFYFFMEHWIPPEVPLAGLRRLLLDRLVFAP 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE6 CFLGCFLPLVGALNGLSAQDNWAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVV :: :. ... :.: .:. ::.. . :: :. .: .:. :. :::..:. . CCDS92 AFLMLFFLIMNFLEGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFA 120 130 140 150 160 170 160 170 pF1KE6 QCVAVIWNSYLSWKAHRL . .:..: .::. CCDS92 NLAALFWYAYLASLGK 180 190 >>CCDS42522.1 MPV17L2 gene_id:84769|Hs108|chr19 (206 aa) initn: 234 init1: 160 opt: 265 Z-score: 357.0 bits: 72.8 E(32554): 1.4e-13 Smith-Waterman score: 273; 29.7% identity (62.2% similar) in 185 aa overlap (4-175:6-188) 10 20 30 40 pF1KE6 MALWRAYQRALAAHPWKVQ--------VLTAGSLMGLGDIISQQL-VERRGLQEHQRG :: .: :.: : .: :.::. :: . :. .. : : . CCDS42 MARGGWRRLRRLLSAGQLLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQVFDPR 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE6 RTLTMVSLGCGFVGPVVGGWYKVLDRFIPGTTKV---DALKKMLLDQGGFAPCFLGCFLP :. .: ..::. .:: . :: :::..:.. ..:::.:.:: .: .:: . CCDS42 RSASMFAVGCS-MGPFLHYWYLSLDRLFPASGLRGFPNVLKKVLVDQLVASP-LLGVWYF 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 L-VGALNGLSAQDNWAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIW : .: :.: .. .. .:.. . . ... .:::.:..:: .:: ..:.. .. ... : CCDS42 LGLGCLEGQTVGESCQELREKFWEFYKADWCVWPAAQFVNFLFVPPQFRVTYINGLTLGW 120 130 140 150 160 170 170 pF1KE6 NSYLSWKAHRL ..:::. .: CCDS42 DTYLSYLKYRSPVPLTPPGCVALDTRAD 180 190 200 176 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:40:08 2016 done: Tue Nov 8 09:40:08 2016 Total Scan time: 1.480 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]