FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5608, 475 aa
  1>>>pF1KE5608 475 - 475 aa - 475 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9434+/-0.000915; mu= 7.2206+/- 0.055
 mean_var=203.0223+/-41.381, 0's: 0 Z-trim(112.7): 124  B-trim: 0 in 0/52
 Lambda= 0.090012
 statistics sampled from 13293 (13425) to 13293 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.412), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS2837.1 RRP9 gene_id:9136|Hs108|chr3            ( 475) 3168 424.0 1.7e-118


>>CCDS2837.1 RRP9 gene_id:9136|Hs108|chr3                 (475 aa)
 initn: 3168 init1: 3168 opt: 3168  Z-score: 2240.9  bits: 424.0 E(32554): 1.7e-118
Smith-Waterman score: 3168; 100.0% identity (100.0% similar) in 475 aa overlap (1-475:1-475)

               10        20        30        40        50        60
pF1KE5 MSATAAARKRGKPASGAGAGAGAGKRRRKADSAGDRGKSKGGGKMNEEISSDSESESLAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MSATAAARKRGKPASGAGAGAGAGKRRRKADSAGDRGKSKGGGKMNEEISSDSESESLAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RKPEEEEEEELEETAQEKKLRLAKLYLEQLRQQEEEKAEARAFEEDQVAGRLKEDVLEQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 RKPEEEEEEELEETAQEKKLRLAKLYLEQLRQQEEEKAEARAFEEDQVAGRLKEDVLEQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 GRLQKLVAKEIQAPASADIRVLRGHQLSITCLVVTPDDSAIFSAAKDCSIIKWSVESGRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 GRLQKLVAKEIQAPASADIRVLRGHQLSITCLVVTPDDSAIFSAAKDCSIIKWSVESGRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 LHVIPRAKKGAEGKPPGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LHVIPRAKKGAEGKPPGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 RDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 RDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 GGRDGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHMVSGADDGSVALWGLSKKRPLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 GGRDGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHMVSGADDGSVALWGLSKKRPLAL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 QREAHGLRGEPGLEQPFWISSVAALLNTDLVATGSHSSCVRLWQCGEGFRQLDLLCDIPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 QREAHGLRGEPGLEQPFWISSVAALLNTDLVATGSHSSCVRLWQCGEGFRQLDLLCDIPL
              370       380       390       400       410       420

              430       440       450       460       470     
pF1KE5 VGFINSLKFSSSGDFLVAGVGQEHRLGRWWRIKEARNSVCIIPLRRVPVPPAAGS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 VGFINSLKFSSSGDFLVAGVGQEHRLGRWWRIKEARNSVCIIPLRRVPVPPAAGS
              430       440       450       460       470     




475 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:06:17 2016 done: Tue Nov  8 05:06:17 2016
 Total Scan time:  2.200 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]