FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6644, 443 aa 1>>>pF1KB6644 443 - 443 aa - 443 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.0281+/-0.000342; mu= -0.2796+/- 0.022 mean_var=336.2921+/-69.647, 0's: 0 Z-trim(124.9): 70 B-trim: 0 in 0/59 Lambda= 0.069938 statistics sampled from 47319 (47400) to 47319 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.556), width: 16 Scan time: 11.390 The best scores are: opt bits E(85289) NP_006550 (OMIM: 602489) KH domain-containing, RNA ( 443) 3078 323.7 6.1e-88 NP_001258807 (OMIM: 602489) KH domain-containing, ( 404) 1697 184.3 5e-46 NP_689901 (OMIM: 610487) KH domain-containing, RNA ( 349) 1442 158.5 2.5e-38 NP_006549 (OMIM: 610421) KH domain-containing, RNA ( 346) 1273 141.5 3.4e-33 XP_016865834 (OMIM: 610487) PREDICTED: KH domain-c ( 299) 1203 134.3 4.1e-31 XP_016865832 (OMIM: 610487) PREDICTED: KH domain-c ( 305) 1203 134.3 4.2e-31 XP_016865830 (OMIM: 610487) PREDICTED: KH domain-c ( 322) 1180 132.0 2.2e-30 XP_011533818 (OMIM: 610487) PREDICTED: KH domain-c ( 322) 1180 132.0 2.2e-30 XP_016865826 (OMIM: 610487) PREDICTED: KH domain-c ( 366) 1168 130.9 5.5e-30 XP_016865831 (OMIM: 610487) PREDICTED: KH domain-c ( 316) 1166 130.6 5.7e-30 XP_011533822 (OMIM: 610487) PREDICTED: KH domain-c ( 285) 1143 128.3 2.6e-29 XP_011533821 (OMIM: 610487) PREDICTED: KH domain-c ( 302) 1142 128.2 2.9e-29 XP_011533819 (OMIM: 610487) PREDICTED: KH domain-c ( 320) 1138 127.8 4.1e-29 XP_011533817 (OMIM: 610487) PREDICTED: KH domain-c ( 324) 1138 127.8 4.1e-29 XP_016865828 (OMIM: 610487) PREDICTED: KH domain-c ( 362) 1139 128.0 4.1e-29 XP_016865829 (OMIM: 610487) PREDICTED: KH domain-c ( 362) 1139 128.0 4.1e-29 XP_016865825 (OMIM: 610487) PREDICTED: KH domain-c ( 367) 1139 128.0 4.2e-29 XP_016865823 (OMIM: 610487) PREDICTED: KH domain-c ( 413) 1139 128.0 4.5e-29 XP_016865824 (OMIM: 610487) PREDICTED: KH domain-c ( 381) 1138 127.9 4.6e-29 XP_011515098 (OMIM: 610421) PREDICTED: KH domain-c ( 346) 1131 127.1 7e-29 XP_005250814 (OMIM: 610421) PREDICTED: KH domain-c ( 318) 1125 126.5 1e-28 XP_011515099 (OMIM: 610421) PREDICTED: KH domain-c ( 319) 1125 126.5 1e-28 XP_005250815 (OMIM: 610421) PREDICTED: KH domain-c ( 302) 1067 120.6 5.6e-27 XP_011515100 (OMIM: 610421) PREDICTED: KH domain-c ( 303) 1022 116.1 1.3e-25 XP_016865836 (OMIM: 610487) PREDICTED: KH domain-c ( 251) 959 109.6 9.4e-24 XP_011515101 (OMIM: 610421) PREDICTED: KH domain-c ( 252) 872 100.9 4.1e-21 XP_016865837 (OMIM: 610487) PREDICTED: KH domain-c ( 180) 806 94.1 3.3e-19 XP_016865833 (OMIM: 610487) PREDICTED: KH domain-c ( 300) 582 71.7 3e-12 XP_016865827 (OMIM: 610487) PREDICTED: KH domain-c ( 364) 582 71.8 3.4e-12 XP_016866993 (OMIM: 609590) PREDICTED: protein qua ( 311) 467 60.1 9.6e-09 XP_011534561 (OMIM: 609590) PREDICTED: protein qua ( 317) 467 60.1 9.7e-09 NP_996737 (OMIM: 609590) protein quaking isoform 4 ( 319) 467 60.1 9.7e-09 NP_996735 (OMIM: 609590) protein quaking isoform 2 ( 319) 467 60.1 9.7e-09 NP_996736 (OMIM: 609590) protein quaking isoform 3 ( 325) 467 60.1 9.9e-09 NP_001288014 (OMIM: 609590) protein quaking isofor ( 333) 467 60.1 1e-08 XP_016866991 (OMIM: 609590) PREDICTED: protein qua ( 337) 467 60.1 1e-08 NP_006766 (OMIM: 609590) protein quaking isoform 1 ( 341) 467 60.1 1e-08 XP_016866992 (OMIM: 609590) PREDICTED: protein qua ( 318) 460 59.4 1.6e-08 XP_011534560 (OMIM: 609590) PREDICTED: protein qua ( 340) 460 59.4 1.7e-08 XP_011534563 (OMIM: 609590) PREDICTED: protein qua ( 198) 400 53.1 7.5e-07 XP_016865835 (OMIM: 610487) PREDICTED: KH domain-c ( 277) 341 47.3 5.9e-05 XP_011534562 (OMIM: 609590) PREDICTED: protein qua ( 293) 287 41.9 0.0027 >>NP_006550 (OMIM: 602489) KH domain-containing, RNA-bin (443 aa) initn: 3078 init1: 3078 opt: 3078 Z-score: 1699.9 bits: 323.7 E(85289): 6.1e-88 Smith-Waterman score: 3078; 100.0% identity (100.0% similar) in 443 aa overlap (1-443:1-443) 10 20 30 40 50 60 pF1KB6 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 GNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 GNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB6 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB6 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB6 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR 370 380 390 400 410 420 430 440 pF1KB6 PSLKAPPARPVKGAYREHPYGRY ::::::::::::::::::::::: NP_006 PSLKAPPARPVKGAYREHPYGRY 430 440 >>NP_001258807 (OMIM: 602489) KH domain-containing, RNA- (404 aa) initn: 1685 init1: 1685 opt: 1697 Z-score: 947.3 bits: 184.3 E(85289): 5e-46 Smith-Waterman score: 2741; 91.2% identity (91.2% similar) in 443 aa overlap (1-443:1-404) 10 20 30 40 50 60 pF1KB6 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQ ::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPK----------- 130 140 150 160 190 200 210 220 230 240 pF1KB6 GNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA :::::::::::::::::::::::::::::::: NP_001 ----------------------------EEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA 170 180 190 200 250 260 270 280 290 300 pF1KB6 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV 210 220 230 240 250 260 310 320 330 340 350 360 pF1KB6 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP 270 280 290 300 310 320 370 380 390 400 410 420 pF1KB6 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR 330 340 350 360 370 380 430 440 pF1KB6 PSLKAPPARPVKGAYREHPYGRY ::::::::::::::::::::::: NP_001 PSLKAPPARPVKGAYREHPYGRY 390 400 >>NP_689901 (OMIM: 610487) KH domain-containing, RNA-bin (349 aa) initn: 1221 init1: 789 opt: 1442 Z-score: 809.0 bits: 158.5 E(85289): 2.5e-38 Smith-Waterman score: 1442; 63.1% identity (81.4% similar) in 360 aa overlap (97-443:1-349) 70 80 90 100 110 120 pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT :: :.:::::::::::::::::.:: .::. NP_689 ME-EEKYLPELMAEKDSLDPSFVHASRLLA 10 20 130 140 150 160 170 180 pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK ::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..: NP_689 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK 30 40 50 60 70 80 190 200 210 220 230 240 pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA :::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :. NP_689 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS 90 100 110 120 130 140 250 260 270 280 290 300 pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG ::.::.:::::::. :.: :::. ::::::: . .:::: .:::: :: : :: NP_689 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRG--IRGRGIRIAPTAPSRGRG 150 160 170 180 190 200 310 320 330 340 350 pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP .. :: : ::..: ::.::::: .: ::..::.:.:::: : .: : NP_689 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP 210 220 230 240 250 360 370 380 390 400 410 pF1KB6 PPPAPETYEEYGYDDTYA----EQSYEGYEGYY-SQSQGDSEYYDYGHGEVQDSYEAYGQ :::: :.:::::::: :. .:.:: :.. : .:.:. :::::::: .:.:..:. NP_689 PPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAP 260 270 280 290 300 310 420 430 440 pF1KB6 DDWNGTRPSLKAPPARPVKGAYREHPYGRY ..: :: :::::: : ..:.::::::::: NP_689 EEWATTRSSLKAPPQRSARGGYREHPYGRY 320 330 340 >>NP_006549 (OMIM: 610421) KH domain-containing, RNA-bin (346 aa) initn: 1201 init1: 709 opt: 1273 Z-score: 716.9 bits: 141.5 E(85289): 3.4e-33 Smith-Waterman score: 1273; 58.2% identity (77.7% similar) in 359 aa overlap (100-443:2-346) 70 80 90 100 110 120 pF1KB6 SATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLTAEI :.::::::::::::::::::::..:.. :: NP_006 MEEKYLPELMAEKDSLDPSFTHALRLVNQEI 10 20 30 130 140 150 160 170 180 pF1KB6 EKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQE ::.:::..: :::.:.:. .::::: ..:::::::.::::::::.:::.::..::::: NP_006 EKFQKGEGK--DEEKYIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQE 40 50 60 70 80 190 200 210 220 230 240 pF1KB6 ETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAME :: .:.:.:::::::::::::::::.:. :: ::: ::::.::::.:: :::: :.::.: NP_006 ETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALE 90 100 110 120 130 140 250 260 270 280 290 300 pF1KB6 EVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRG---RGVP-VRGRGAAPPPPPVPRGRG :.::::.::. :.: : :. ::.:::: : . :: : .: ::. : : . :::: NP_006 EIKKFLIPDYNDEIRQAQLQELTYLNGGSENADVPVVRGKPTLRTRGV--PAPAITRGRG 150 160 170 180 190 200 310 320 330 340 350 pF1KB6 --VGPPRGALV-RGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRI---PLPP .. : :..: ::::. ::. ::: : :: .:::: :. : :: NP_006 GVTARPVGVVVPRGTPT----PRGVLSTRG--PVSRGRGLLTPRAR--GVPPTGYRPPPP 210 220 230 240 250 360 370 380 390 400 410 pF1KB6 PPAPETYEEYGYDDTYA----EQSYEGYEGYYSQ-SQGDSEYYDYGHGEVQDSYEAYGQD ::. ::: :: ::: :. ::::..:.. :: .:. ..::::::: ...:..:::. NP_006 PPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGADYYDYGHGLSEETYDSYGQE 260 270 280 290 300 310 420 430 440 pF1KB6 DWNGTRPSLKAPPARPVKGAYREHPYGRY .:...: ::: :: .::.::..::::: NP_006 EWTNSRH--KAPSARTAKGVYRDQPYGRY 320 330 340 >>XP_016865834 (OMIM: 610487) PREDICTED: KH domain-conta (299 aa) initn: 972 init1: 789 opt: 1203 Z-score: 679.6 bits: 134.3 E(85289): 4.1e-31 Smith-Waterman score: 1203; 63.6% identity (81.5% similar) in 308 aa overlap (97-391:1-297) 70 80 90 100 110 120 pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT :: :.:::::::::::::::::.:: .::. XP_016 ME-EEKYLPELMAEKDSLDPSFVHASRLLA 10 20 130 140 150 160 170 180 pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK ::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..: XP_016 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK 30 40 50 60 70 80 190 200 210 220 230 240 pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA :::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :. XP_016 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS 90 100 110 120 130 140 250 260 270 280 290 300 pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG ::.::.:::::::. :.: :::. ::::::: . .::::. :::: :: : :: XP_016 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRGI--RGRGIRIAPTAPSRGRG 150 160 170 180 190 200 310 320 330 340 350 pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP .. :: : ::..: ::.::::: .: ::..::.:.:::: : .: : XP_016 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP 210 220 230 240 250 360 370 380 390 400 410 pF1KB6 PPPAPETYEEYGYDDTYA----EQSYEGYEGYY-SQSQGDSEYYDYGHGEVQDSYEAYGQ :::: :.:::::::: :. .:.:: :.. : .:.: XP_016 PPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQRY 260 270 280 290 420 430 440 pF1KB6 DDWNGTRPSLKAPPARPVKGAYREHPYGRY >>XP_016865832 (OMIM: 610487) PREDICTED: KH domain-conta (305 aa) initn: 972 init1: 789 opt: 1203 Z-score: 679.5 bits: 134.3 E(85289): 4.2e-31 Smith-Waterman score: 1203; 63.6% identity (81.5% similar) in 308 aa overlap (97-391:1-297) 70 80 90 100 110 120 pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT :: :.:::::::::::::::::.:: .::. XP_016 ME-EEKYLPELMAEKDSLDPSFVHASRLLA 10 20 130 140 150 160 170 180 pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK ::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..: XP_016 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK 30 40 50 60 70 80 190 200 210 220 230 240 pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA :::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :. XP_016 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS 90 100 110 120 130 140 250 260 270 280 290 300 pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG ::.::.:::::::. :.: :::. ::::::: . .::::. :::: :: : :: XP_016 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRGI--RGRGIRIAPTAPSRGRG 150 160 170 180 190 200 310 320 330 340 350 pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP .. :: : ::..: ::.::::: .: ::..::.:.:::: : .: : XP_016 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP 210 220 230 240 250 360 370 380 390 400 410 pF1KB6 PPPAPETYEEYGYDDTYA----EQSYEGYEGYY-SQSQGDSEYYDYGHGEVQDSYEAYGQ :::: :.:::::::: :. .:.:: :.. : .:.: XP_016 PPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQRTYRVCGQ 260 270 280 290 300 420 430 440 pF1KB6 DDWNGTRPSLKAPPARPVKGAYREHPYGRY >>XP_016865830 (OMIM: 610487) PREDICTED: KH domain-conta (322 aa) initn: 934 init1: 789 opt: 1180 Z-score: 666.6 bits: 132.0 E(85289): 2.2e-30 Smith-Waterman score: 1180; 59.6% identity (78.4% similar) in 334 aa overlap (97-413:1-322) 70 80 90 100 110 120 pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT :: :.:::::::::::::::::.:: .::. XP_016 ME-EEKYLPELMAEKDSLDPSFVHASRLLA 10 20 130 140 150 160 170 180 pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK ::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..: XP_016 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK 30 40 50 60 70 80 190 200 210 220 230 240 pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA :::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :. XP_016 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS 90 100 110 120 130 140 250 260 270 280 290 300 pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG ::.::.:::::::. :.: :::. ::::::: . .::::. :::: :: : :: XP_016 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRGI--RGRGIRIAPTAPSRGRG 150 160 170 180 190 200 310 320 330 340 350 pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP .. :: : ::..: ::.::::: .: ::..::.:.:::: : .: : XP_016 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP 210 220 230 240 250 360 370 380 390 400 pF1KB6 PPPAPETYEEYG------YDDTYAEQSYEGYEGYYSQSQGDSEY--YDYGHG-EVQDSYE :::: :.:::: . :: : .:..::. :. :. : :: ... ..: .:. XP_016 PPPAHEAYEEYPSLPLSLFFDTVA-KSHQGYDDGYGGEYDDQTYETYDNSYATQTQRTYR 260 270 280 290 300 310 410 420 430 440 pF1KB6 AYGQDDWNGTRPSLKAPPARPVKGAYREHPYGRY . :: XP_016 VCGQ 320 >>XP_011533818 (OMIM: 610487) PREDICTED: KH domain-conta (322 aa) initn: 934 init1: 789 opt: 1180 Z-score: 666.6 bits: 132.0 E(85289): 2.2e-30 Smith-Waterman score: 1180; 59.6% identity (78.4% similar) in 334 aa overlap (97-413:1-322) 70 80 90 100 110 120 pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT :: :.:::::::::::::::::.:: .::. XP_011 ME-EEKYLPELMAEKDSLDPSFVHASRLLA 10 20 130 140 150 160 170 180 pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK ::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..: XP_011 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK 30 40 50 60 70 80 190 200 210 220 230 240 pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA :::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :. XP_011 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS 90 100 110 120 130 140 250 260 270 280 290 300 pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG ::.::.:::::::. :.: :::. ::::::: . .::::. :::: :: : :: XP_011 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRGI--RGRGIRIAPTAPSRGRG 150 160 170 180 190 200 310 320 330 340 350 pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP .. :: : ::..: ::.::::: .: ::..::.:.:::: : .: : XP_011 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP 210 220 230 240 250 360 370 380 390 400 pF1KB6 PPPAPETYEEYG------YDDTYAEQSYEGYEGYYSQSQGDSEY--YDYGHG-EVQDSYE :::: :.:::: . :: : .:..::. :. :. : :: ... ..: .:. XP_011 PPPAHEAYEEYPSLPLSLFFDTVA-KSHQGYDDGYGGEYDDQTYETYDNSYATQTQRTYR 260 270 280 290 300 310 410 420 430 440 pF1KB6 AYGQDDWNGTRPSLKAPPARPVKGAYREHPYGRY . :: XP_011 VCGQ 320 >>XP_016865826 (OMIM: 610487) PREDICTED: KH domain-conta (366 aa) initn: 1183 init1: 789 opt: 1168 Z-score: 659.4 bits: 130.9 E(85289): 5.5e-30 Smith-Waterman score: 1398; 60.2% identity (77.7% similar) in 377 aa overlap (97-443:1-366) 70 80 90 100 110 120 pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT :: :.:::::::::::::::::.:: .::. XP_016 ME-EEKYLPELMAEKDSLDPSFVHASRLLA 10 20 130 140 150 160 170 180 pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK ::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..: XP_016 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK 30 40 50 60 70 80 190 200 210 220 230 240 pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA :::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :. XP_016 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS 90 100 110 120 130 140 250 260 270 280 290 300 pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG ::.::.:::::::. :.: :::. ::::::: . .:::: .:::: :: : :: XP_016 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRG--IRGRGIRIAPTAPSRGRG 150 160 170 180 190 200 310 320 330 340 350 pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP .. :: : ::..: ::.::::: .: ::..::.:.:::: : .: : XP_016 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP 210 220 230 240 250 360 370 380 390 pF1KB6 PPPAPETYEEY-----------------GYDDTYA----EQSYEGYEGYY-SQSQGDSEY :::: :.:::: :::: :. .:.:: :.. : .:.:. :: XP_016 PPPAHEAYEEYPSLPLSLFFDTVAKSHQGYDDGYGGEYDDQTYETYDNSYATQTQSVPEY 260 270 280 290 300 310 400 410 420 430 440 pF1KB6 YDYGHGEVQDSYEAYGQDDWNGTRPSLKAPPARPVKGAYREHPYGRY :::::: .:.:..:. ..: :: :::::: : ..:.::::::::: XP_016 YDYGHGVSEDAYDSYAPEEWATTRSSLKAPPQRSARGGYREHPYGRY 320 330 340 350 360 >>XP_016865831 (OMIM: 610487) PREDICTED: KH domain-conta (316 aa) initn: 934 init1: 789 opt: 1166 Z-score: 659.1 bits: 130.6 E(85289): 5.7e-30 Smith-Waterman score: 1166; 61.2% identity (78.5% similar) in 317 aa overlap (97-399:1-305) 70 80 90 100 110 120 pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT :: :.:::::::::::::::::.:: .::. XP_016 ME-EEKYLPELMAEKDSLDPSFVHASRLLA 10 20 130 140 150 160 170 180 pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK ::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..: XP_016 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK 30 40 50 60 70 80 190 200 210 220 230 240 pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA :::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :. XP_016 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS 90 100 110 120 130 140 250 260 270 280 290 300 pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG ::.::.:::::::. :.: :::. ::::::: . .:::: .:::: :: : :: XP_016 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRG--IRGRGIRIAPTAPSRGRG 150 160 170 180 190 200 310 320 330 340 350 pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP .. :: : ::..: ::.::::: .: ::..::.:.:::: : .: : XP_016 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP 210 220 230 240 250 360 370 380 390 400 410 pF1KB6 PPPAPETYEEYG------YDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYG :::: :.:::: . :: : .:..::. :. :. : : XP_016 PPPAHEAYEEYPSLPLSLFFDTVA-KSHQGYDDGYGGEYDDQTYETYDNSYATQTQRY 260 270 280 290 300 310 420 430 440 pF1KB6 QDDWNGTRPSLKAPPARPVKGAYREHPYGRY 443 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:33:46 2016 done: Sun Nov 6 23:33:48 2016 Total Scan time: 11.390 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]