Result of FASTA (ccds) for
pFN21AB6644
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6644, 443 aa
1>>>pF1KB6644 443 - 443 aa - 443 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.7384+/-0.000874; mu= 1.4970+/- 0.053
mean_var=305.5759+/-62.915, 0's: 0 Z-trim(117.0): 21 B-trim: 0 in 0/53
Lambda= 0.073369
statistics sampled from 17664 (17683) to 17664 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.543), width: 16
Scan time: 3.860
The best scores are: opt bits E(32554)
CCDS350.1 KHDRBS1 gene_id:10657|Hs108|chr1 ( 443) 3078 338.7 7.2e-93
CCDS60067.1 KHDRBS1 gene_id:10657|Hs108|chr1 ( 404) 1697 192.4 6.8e-49
CCDS4963.1 KHDRBS2 gene_id:202559|Hs108|chr6 ( 349) 1442 165.4 8.2e-41
CCDS6374.1 KHDRBS3 gene_id:10656|Hs108|chr8 ( 346) 1273 147.5 2e-35
>>CCDS350.1 KHDRBS1 gene_id:10657|Hs108|chr1 (443 aa)
initn: 3078 init1: 3078 opt: 3078 Z-score: 1780.8 bits: 338.7 E(32554): 7.2e-93
Smith-Waterman score: 3078; 100.0% identity (100.0% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KB6 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR
370 380 390 400 410 420
430 440
pF1KB6 PSLKAPPARPVKGAYREHPYGRY
:::::::::::::::::::::::
CCDS35 PSLKAPPARPVKGAYREHPYGRY
430 440
>>CCDS60067.1 KHDRBS1 gene_id:10657|Hs108|chr1 (404 aa)
initn: 1685 init1: 1685 opt: 1697 Z-score: 991.3 bits: 192.4 E(32554): 6.8e-49
Smith-Waterman score: 2741; 91.2% identity (91.2% similar) in 443 aa overlap (1-443:1-404)
10 20 30 40 50 60
pF1KB6 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQ
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPK-----------
130 140 150 160
190 200 210 220 230 240
pF1KB6 GNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA
::::::::::::::::::::::::::::::::
CCDS60 ----------------------------EEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA
170 180 190 200
250 260 270 280 290 300
pF1KB6 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB6 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB6 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR
330 340 350 360 370 380
430 440
pF1KB6 PSLKAPPARPVKGAYREHPYGRY
:::::::::::::::::::::::
CCDS60 PSLKAPPARPVKGAYREHPYGRY
390 400
>>CCDS4963.1 KHDRBS2 gene_id:202559|Hs108|chr6 (349 aa)
initn: 1221 init1: 789 opt: 1442 Z-score: 846.2 bits: 165.4 E(32554): 8.2e-41
Smith-Waterman score: 1442; 63.1% identity (81.4% similar) in 360 aa overlap (97-443:1-349)
70 80 90 100 110 120
pF1KB6 LPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLT
:: :.:::::::::::::::::.:: .::.
CCDS49 ME-EEKYLPELMAEKDSLDPSFVHASRLLA
10 20
130 140 150 160 170 180
pF1KB6 AEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIK
::::.: .:.::.:::. :::..:.::.::.::::::::::::::::::.:::.::..:
CCDS49 EEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLK
30 40 50 60 70 80
190 200 210 220 230 240
pF1KB6 RLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMA
:::::::::.:.:::::::::::::::::.:. :::::. .:::.::::.:: :::. :.
CCDS49 RLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMS
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB6 HAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGA--APPPPPVPRG
::.::.:::::::. :.: :::. ::::::: . .:::: .:::: :: : ::
CCDS49 HALEEIKKFLVPDYNDEIRQEQLRELSYLNGSEDSGRGRG--IRGRGIRIAPTAPSRGRG
150 160 170 180 190 200
310 320 330 340 350
pF1KB6 RGVGPPRGALVRGTPVRGAIT-RGATVTRG-VPPPPTVRGAPAPRARTAGIQRIP---LP
.. :: : ::..: ::.::::: .: ::..::.:.:::: : .: :
CCDS49 GAIPPP------PPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRAR--GAPTVPGYRAP
210 220 230 240 250
360 370 380 390 400 410
pF1KB6 PPPAPETYEEYGYDDTYA----EQSYEGYEGYY-SQSQGDSEYYDYGHGEVQDSYEAYGQ
:::: :.:::::::: :. .:.:: :.. : .:.:. :::::::: .:.:..:.
CCDS49 PPPAHEAYEEYGYDDGYGGEYDDQTYETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAP
260 270 280 290 300 310
420 430 440
pF1KB6 DDWNGTRPSLKAPPARPVKGAYREHPYGRY
..: :: :::::: : ..:.:::::::::
CCDS49 EEWATTRSSLKAPPQRSARGGYREHPYGRY
320 330 340
>>CCDS6374.1 KHDRBS3 gene_id:10656|Hs108|chr8 (346 aa)
initn: 1201 init1: 709 opt: 1273 Z-score: 749.6 bits: 147.5 E(32554): 2e-35
Smith-Waterman score: 1273; 58.2% identity (77.7% similar) in 359 aa overlap (100-443:2-346)
70 80 90 100 110 120
pF1KB6 SATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTHAMQLLTAEI
:.::::::::::::::::::::..:.. ::
CCDS63 MEEKYLPELMAEKDSLDPSFTHALRLVNQEI
10 20 30
130 140 150 160 170 180
pF1KB6 EKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQE
::.:::..: :::.:.:. .::::: ..:::::::.::::::::.:::.::..:::::
CCDS63 EKFQKGEGK--DEEKYIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQE
40 50 60 70 80
190 200 210 220 230 240
pF1KB6 ETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAME
:: .:.:.:::::::::::::::::.:. :: ::: ::::.::::.:: :::: :.::.:
CCDS63 ETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALE
90 100 110 120 130 140
250 260 270 280 290 300
pF1KB6 EVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRG---RGVP-VRGRGAAPPPPPVPRGRG
:.::::.::. :.: : :. ::.:::: : . :: : .: ::. : : . ::::
CCDS63 EIKKFLIPDYNDEIRQAQLQELTYLNGGSENADVPVVRGKPTLRTRGV--PAPAITRGRG
150 160 170 180 190 200
310 320 330 340 350
pF1KB6 --VGPPRGALV-RGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRI---PLPP
.. : :..: ::::. ::. ::: : :: .:::: :. : ::
CCDS63 GVTARPVGVVVPRGTPT----PRGVLSTRG--PVSRGRGLLTPRAR--GVPPTGYRPPPP
210 220 230 240 250
360 370 380 390 400 410
pF1KB6 PPAPETYEEYGYDDTYA----EQSYEGYEGYYSQ-SQGDSEYYDYGHGEVQDSYEAYGQD
::. ::: :: ::: :. ::::..:.. :: .:. ..::::::: ...:..:::.
CCDS63 PPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSGADYYDYGHGLSEETYDSYGQE
260 270 280 290 300 310
420 430 440
pF1KB6 DWNGTRPSLKAPPARPVKGAYREHPYGRY
.:...: ::: :: .::.::..:::::
CCDS63 EWTNSRH--KAPSARTAKGVYRDQPYGRY
320 330 340
443 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:33:45 2016 done: Sun Nov 6 23:33:46 2016
Total Scan time: 3.860 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]