FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5712, 732 aa
  1>>>pF1KE5712 732 - 732 aa - 732 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5827+/-0.000876; mu= 18.8464+/- 0.053
 mean_var=80.1445+/-16.554, 0's: 0 Z-trim(107.5): 18  B-trim: 473 in 1/50
 Lambda= 0.143264
 statistics sampled from 9579 (9595) to 9579 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.295), width:  16
 Scan time:  4.090

The best scores are:                                      opt bits E(32554)
CCDS2801.1 APEH gene_id:327|Hs108|chr3             ( 732) 5016 1046.9       0


>>CCDS2801.1 APEH gene_id:327|Hs108|chr3                  (732 aa)
 initn: 5016 init1: 5016 opt: 5016  Z-score: 5600.3  bits: 1046.9 E(32554):    0
Smith-Waterman score: 5016; 100.0% identity (100.0% similar) in 732 aa overlap (1-732:1-732)

               10        20        30        40        50        60
pF1KE5 MERQVLLSEPEEAAALYRGLSRQPALSAACLGPEVTTQYGGQYRTVHTEWTQRDLERMEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MERQVLLSEPEEAAALYRGLSRQPALSAACLGPEVTTQYGGQYRTVHTEWTQRDLERMEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAGGTGPGEEKQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 IRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAGGTGPGEEKQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKRPKAESFFQTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKRPKAESFFQTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 ALDVSASDDEIARLKKPDQAIKGDQFVFYEDWGENMVSKSIPVLCVLDVESGNISVLEGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 ALDVSASDDEIARLKKPDQAIKGDQFVFYEDWGENMVSKSIPVLCVLDVESGNISVLEGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 PENVSPGQAFWAPGDAGVVFVGWWHEPFRLGIRFCTNRRSALYYVDLIGGKCELLSDDSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 PENVSPGQAFWAPGDAGVVFVGWWHEPFRLGIRFCTNRRSALYYVDLIGGKCELLSDDSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 AVSSPRLSPDQCRIVYLQYPSLIPHHQCSQLCLYDWYTKVTSVVVDVVPRQLGENFSGIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 AVSSPRLSPDQCRIVYLQYPSLIPHHQCSQLCLYDWYTKVTSVVVDVVPRQLGENFSGIY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 CSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQVGTVTSLTAGGSGGSWKLLTIDQDLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 CSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQVGTVTSLTAGGSGGSWKLLTIDQDLM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 VAQFSTPSLPPTLKVGFLPSAGKEQSVLWVSLEEAEPIPDIHWGIRVLQPPPEQENVQYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 VAQFSTPSLPPTLKVGFLPSAGKEQSVLWVSLEEAEPIPDIHWGIRVLQPPPEQENVQYA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 GLDFEAILLQPGSPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 GLDFEAILLQPGSPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE5 TGFGQDSILSLPGNVGHQDVKDVQFAVEQVLQEEHFDASHVALMGGSHGGFISCHLIGQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 TGFGQDSILSLPGNVGHQDVKDVQFAVEQVLQEEHFDASHVALMGGSHGGFISCHLIGQY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE5 PETYRACVARNPVINIASMLGSTDIPDWCVVEAGFPFSSDCLPDLSVWAEMLDKSPIRYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 PETYRACVARNPVINIASMLGSTDIPDWCVVEAGFPFSSDCLPDLSVWAEMLDKSPIRYI
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE5 PQVKTPLLLMLGQEDRRVPFKQGMEYYRALKTRNVPVRLLLYPKSTHALSEVEVESDSFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 PQVKTPLLLMLGQEDRRVPFKQGMEYYRALKTRNVPVRLLLYPKSTHALSEVEVESDSFM
              670       680       690       700       710       720

              730  
pF1KE5 NAVLWLRTHLGS
       ::::::::::::
CCDS28 NAVLWLRTHLGS
              730  




732 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:59:46 2016 done: Tue Nov  8 05:59:47 2016
 Total Scan time:  4.090 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]