FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1507, 295 aa 1>>>pF1KE1507 295 - 295 aa - 295 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3776+/-0.000996; mu= 14.9705+/- 0.059 mean_var=63.4518+/-12.795, 0's: 0 Z-trim(103.7): 30 B-trim: 373 in 1/50 Lambda= 0.161010 statistics sampled from 7488 (7515) to 7488 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.231), width: 16 Scan time: 2.240 The best scores are: opt bits E(32554) CCDS4360.1 CCNG1 gene_id:900|Hs108|chr5 ( 295) 1931 457.3 6.1e-129 CCDS3581.1 CCNG2 gene_id:901|Hs108|chr4 ( 344) 972 234.6 8e-62 CCDS3580.1 CCNI gene_id:10983|Hs108|chr4 ( 377) 369 94.5 1.3e-19 CCDS34236.1 CCNI2 gene_id:645121|Hs108|chr5 ( 369) 288 75.7 5.7e-14 >>CCDS4360.1 CCNG1 gene_id:900|Hs108|chr5 (295 aa) initn: 1931 init1: 1931 opt: 1931 Z-score: 2428.4 bits: 457.3 E(32554): 6.1e-129 Smith-Waterman score: 1931; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295) 10 20 30 40 50 60 pF1KE1 MIEVLTTTDSQKLLHQLNALLEQESRCQPKVCGLRLIESAHDNGLRMTARLRDFEVKDLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MIEVLTTTDSQKLLHQLNALLEQESRCQPKVCGLRLIESAHDNGLRMTARLRDFEVKDLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVPLATD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 SLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVPLATD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LIRISQYRFTVSDLMRMEKIVLEKVCWKVKATTAFQFLQLYYSLLQENLPLERRNSINFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LIRISQYRFTVSDLMRMEKIVLEKVCWKVKATTAFQFLQLYYSLLQENLPLERRNSINFE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RLEAQLKACHCRIIFSKAKPSVLALSIIALEIQAQKCVELTEGIECLQKHSKINGRDLTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 RLEAQLKACHCRIIFSKAKPSVLALSIIALEIQAQKCVELTEGIECLQKHSKINGRDLTF 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 WQELVSKCLTEYSSNKCSKPNVQKLKWIVSGRTARQLKHSYYRITHLPTIPEMVP ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 WQELVSKCLTEYSSNKCSKPNVQKLKWIVSGRTARQLKHSYYRITHLPTIPEMVP 250 260 270 280 290 >>CCDS3581.1 CCNG2 gene_id:901|Hs108|chr4 (344 aa) initn: 972 init1: 498 opt: 972 Z-score: 1223.4 bits: 234.6 E(32554): 8e-62 Smith-Waterman score: 972; 52.8% identity (79.3% similar) in 290 aa overlap (3-292:7-295) 10 20 30 40 50 pF1KE1 MIEVLTTTDSQKLLHQLNALLEQESRCQPKVCGLRLIESAHDNGLRMTARLRDFEV : :. .. .:: ::. :::: : ::. :: :::.. .: . ::. .: CCDS35 MKDLGAEHLAGHEGVQLLGLLNVYLEQEERFQPREKGLSLIEATPENDNTLCPGLRNAKV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 KDLLSLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVP .:: ::..::: :::: ::::.:::::. :::.::::.:.:. : ::.. .::. :.: CCDS35 EDLRSLANFFGSCTETFVLAVNILDRFLALMKVKPKHLSCIGVCSFLLAARIVEEDCNIP 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 LATDLIRISQYRFTVSDLMRMEKIVLEKVCWKVKATTAFQFLQLYYSLLQENLPLERRNS . :.::::: . :.::. :::::. ::. ....::::..::.::.... . ::.. CCDS35 STHDVIRISQCKCTASDIKRMEKIISEKLHYELEATTALNFLHLYHTIILCHTS-ERKEI 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 INFERLEAQLKACHCRIIFSKAKPSVLALSIIALEIQAQKCVELTEGIECLQKHSKINGR .....::::::::.::.:::::::::::: .. ::... : ::: : . ..:::::: CCDS35 LSLDKLEAQLKACNCRLIFSKAKPSVLALCLLNLEVETLKSVELLEILLLVKKHSKINDT 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 DLTFWQELVSKCLTEYSSNKCSKPNVQKLKWIVSGRTARQLKHSYYRITHLPTIPEMVP .. .:.:::::::.:::: .: ::...:: :::: :::..:..::: . .:::::: CCDS35 EFFYWRELVSKCLAEYSSPECCKPDLKKLVWIVSRRTAQNLHNSYYSVPELPTIPEGGCF 240 250 260 270 280 290 CCDS35 DESESEDSCEDMSCGEESLSSSPPSDQECTFFFNFKVAQTLCFPS 300 310 320 330 340 >>CCDS3580.1 CCNI gene_id:10983|Hs108|chr4 (377 aa) initn: 359 init1: 308 opt: 369 Z-score: 465.8 bits: 94.5 E(32554): 1.3e-19 Smith-Waterman score: 369; 31.0% identity (65.1% similar) in 255 aa overlap (9-255:8-253) 10 20 30 40 50 60 pF1KE1 MIEVLTTTDSQKLLHQLNALLEQESRCQPKVCGLRLIESAHDNGLRMTARLRDFEVKDLL ..:.: :. . .:.. :: ..: . : .. .. :: .. : CCDS35 MKFPGPLENQRLSFLLEKAITREAQMW-KV-NVRKMPSNQN----VSPSQRDEVIQWLA 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 SLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCVGLSCFYLAVKSIEEERNVPLATD .: :.. :::.:: .::::::. .:..::.:.:...:::.::.:..::.. .:. CCDS35 KLKYQFNLYPETFALASSLLDRFLATVKAHPKYLSCIAISCFFLAAKTVEEDERIPVLKV 60 70 80 90 100 110 130 140 150 160 170 pF1KE1 LIRISQYRFTVSDLMRMEKIVLEKVCWKVKATTAFQFLQLYYSL-------LQENLPLER : : : . :...:::.:.:.:. : ....: ..::...... : .:: . CCDS35 LARDSFCGCSSSEILRMERIILDKLNWDLHTATPLDFLHIFHAIAVSTRPQLLFSLP-KL 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 RNSINFERLEAQLKACH-CRIIFSKAKPSVLALSIIALEIQAQKCVELTEGIECLQKHSK : .. : :: : : .. . . :.:::....::.. :. :: ::: .. CCDS35 SPSQHLAVLTKQLLHCMACNQLL-QFRGSMLALAMVSLEMEKLIPDWLSLTIELLQK-AQ 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 INGRDLTFWQELVSKCLTEYSSNKCSKPNVQKLKWIVSGRTARQLKHSYYRITHLPTIPE ... .: .:::.. :. .:. CCDS35 MDSSQLIHCRELVAHHLSTLQSSLPLNSVYVYRPLKHTLVTCDKGVFRLHPSSVPGPDFS 240 250 260 270 280 290 >>CCDS34236.1 CCNI2 gene_id:645121|Hs108|chr5 (369 aa) initn: 272 init1: 216 opt: 288 Z-score: 364.3 bits: 75.7 E(32554): 5.7e-14 Smith-Waterman score: 293; 29.2% identity (61.2% similar) in 209 aa overlap (59-258:157-361) 30 40 50 60 70 80 pF1KE1 PKVCGLRLIESAHDNGLRMTARLRDFEVKDLLSLTQFFGFDTETFSLAVNLLDRFLSKMK :: : . : :. ::.::.... :.: ..: CCDS34 QLAQDREARLWRGGKPQDEICDAFEEVVLWLLRLQNTFYFSQSTFNLALTIFGRLLISVK 130 140 150 160 170 180 90 100 110 120 130 140 pF1KE1 VQPKHLGCVGLSCFYLAVKSIEEERNVPLATDLIRISQYRFTVSDLMRMEKIVLEKVCWK :. :.: :. .. . ::.: :::. .: . :. . .. ..:.::: .:... : CCDS34 VKEKYLHCATITSLRLAAKVNEEEEFIPQVKDFTKHYGSDYSPNELLRMELAILDRLHWD 190 200 210 220 230 240 150 160 170 180 190 200 pF1KE1 VKATTAFQFLQLYYSLLQENLP-----LERRN-SINFERLEAQLKACHCRIIFSKAKPSV . : ..:: ....:. . : : .:: :.. : ::. : . . : :. CCDS34 LYIGTPLDFLTIFHALVVLSWPHVLELLPQRNPSLHVASLTRQLQHCMAGHQLLQFKGST 250 260 270 280 290 300 210 220 230 240 250 pF1KE1 LALSIIALEIQAQK---CVELTEGIECLQKHSKINGRDLTFWQELVSKCLTEYSSNKCSK ::: ::.::.. :. ... : :..... . . .::: . : .:..:. CCDS34 LALVIITLELERLMPGWCAPISD----LLKKAQVGDMQYSCCKELVMQQLRSLQSSSCTD 310 320 330 340 350 360 260 270 280 290 pF1KE1 PNVQKLKWIVSGRTARQLKHSYYRITHLPTIPEMVP CCDS34 NFVSPAN 295 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:38:16 2016 done: Sun Nov 6 23:38:17 2016 Total Scan time: 2.240 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]