FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4328, 334 aa
  1>>>pF1KE4328 334 - 334 aa - 334 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7096+/-0.000981; mu= 13.0976+/- 0.059
 mean_var=60.4625+/-12.262, 0's: 0 Z-trim(103.6): 23  B-trim: 5 in 1/49
 Lambda= 0.164942
 statistics sampled from 7505 (7509) to 7505 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.231), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS5086.1 AMD1 gene_id:262|Hs108|chr6             ( 334) 2244 542.7 1.6e-154
CCDS75505.1 AMD1 gene_id:262|Hs108|chr6            ( 265) 1789 434.4 4.9e-122
CCDS75504.1 AMD1 gene_id:262|Hs108|chr6            ( 214) 1177 288.7 2.8e-78


>>CCDS5086.1 AMD1 gene_id:262|Hs108|chr6                  (334 aa)
 initn: 2244 init1: 2244 opt: 2244  Z-score: 2887.8  bits: 542.7 E(32554): 1.6e-154
Smith-Waterman score: 2244; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)

               10        20        30        40        50        60
pF1KE4 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 SHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 TIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 TIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ
              250       260       270       280       290       300

              310       320       330    
pF1KE4 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
       ::::::::::::::::::::::::::::::::::
CCDS50 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
              310       320       330    

>>CCDS75505.1 AMD1 gene_id:262|Hs108|chr6                 (265 aa)
 initn: 1789 init1: 1789 opt: 1789  Z-score: 2304.4  bits: 434.4 E(32554): 4.9e-122
Smith-Waterman score: 1789; 100.0% identity (100.0% similar) in 265 aa overlap (70-334:1-265)

      40        50        60        70        80        90         
pF1KE4 WDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLAR
                                     ::::::::::::::::::::::::::::::
CCDS75                               MFVSKRRFILKTCGTTLLLKALVPLLKLAR
                                             10        20        30

     100       110       120       130       140       150         
pF1KE4 DYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYL
               40        50        60        70        80        90

     160       170       180       190       200       210         
pF1KE4 YTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVID
              100       110       120       130       140       150

     220       230       240       250       260       270         
pF1KE4 ATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGK
              160       170       180       190       200       210

     280       290       300       310       320       330    
pF1KE4 FVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
              220       230       240       250       260     

>>CCDS75504.1 AMD1 gene_id:262|Hs108|chr6                 (214 aa)
 initn: 1418 init1: 1177 opt: 1177  Z-score: 1518.9  bits: 288.7 E(32554): 2.8e-78
Smith-Waterman score: 1182; 64.1% identity (64.1% similar) in 334 aa overlap (1-334:1-214)

               10        20        30        40        50        60
pF1KE4 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQ
       :::::::::::::::::::::::::::::::::::::                       
CCDS75 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPR-----------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KE4 EAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKP
                                                                   
CCDS75 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KE4 SHQGYPHRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEIL
                                            :::::::::::::::::::::::
CCDS75 -------------------------------------YLYTLDFPESRVISQPDQTLEIL
                                             40        50        60

              190       200       210       220       230       240
pF1KE4 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYW
               70        80        90       100       110       120

              250       260       270       280       290       300
pF1KE4 TIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQ
              130       140       150       160       170       180

              310       320       330    
pF1KE4 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
       ::::::::::::::::::::::::::::::::::
CCDS75 KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
              190       200       210    




334 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 02:16:59 2016 done: Sun Nov  6 02:16:59 2016
 Total Scan time:  2.430 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]