FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4448, 463 aa 1>>>pF1KE4448 463 - 463 aa - 463 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4264+/-0.000336; mu= 17.6975+/- 0.021 mean_var=73.7139+/-15.568, 0's: 0 Z-trim(115.4): 9 B-trim: 1229 in 1/51 Lambda= 0.149382 statistics sampled from 25776 (25785) to 25776 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.302), width: 16 Scan time: 8.160 The best scores are: opt bits E(85289) NP_004541 (OMIM: 252010,602985) NADH dehydrogenase ( 463) 3183 695.3 9.3e-200 XP_016856846 (OMIM: 252010,602985) PREDICTED: NADH ( 463) 3183 695.3 9.3e-200 XP_005245265 (OMIM: 252010,602985) PREDICTED: NADH ( 463) 3183 695.3 9.3e-200 NP_001159631 (OMIM: 252010,602985) NADH dehydrogen ( 457) 3126 683.0 4.6e-196 XP_005245266 (OMIM: 252010,602985) PREDICTED: NADH ( 365) 2475 542.6 6.6e-154 >>NP_004541 (OMIM: 252010,602985) NADH dehydrogenase [ub (463 aa) initn: 3183 init1: 3183 opt: 3183 Z-score: 3707.3 bits: 695.3 E(85289): 9.3e-200 Smith-Waterman score: 3183; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:1-463) 10 20 30 40 50 60 pF1KE4 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 370 380 390 400 410 420 430 440 450 460 pF1KE4 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR ::::::::::::::::::::::::::::::::::::::::::: NP_004 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 430 440 450 460 >>XP_016856846 (OMIM: 252010,602985) PREDICTED: NADH deh (463 aa) initn: 3183 init1: 3183 opt: 3183 Z-score: 3707.3 bits: 695.3 E(85289): 9.3e-200 Smith-Waterman score: 3183; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:1-463) 10 20 30 40 50 60 pF1KE4 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 370 380 390 400 410 420 430 440 450 460 pF1KE4 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR ::::::::::::::::::::::::::::::::::::::::::: XP_016 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 430 440 450 460 >>XP_005245265 (OMIM: 252010,602985) PREDICTED: NADH deh (463 aa) initn: 3183 init1: 3183 opt: 3183 Z-score: 3707.3 bits: 695.3 E(85289): 9.3e-200 Smith-Waterman score: 3183; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:1-463) 10 20 30 40 50 60 pF1KE4 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 370 380 390 400 410 420 430 440 450 460 pF1KE4 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR ::::::::::::::::::::::::::::::::::::::::::: XP_005 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 430 440 450 460 >>NP_001159631 (OMIM: 252010,602985) NADH dehydrogenase (457 aa) initn: 3126 init1: 3126 opt: 3126 Z-score: 3641.0 bits: 683.0 E(85289): 4.6e-196 Smith-Waterman score: 3126; 99.6% identity (99.8% similar) in 457 aa overlap (1-457:1-457) 10 20 30 40 50 60 pF1KE4 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 370 380 390 400 410 420 430 440 450 460 pF1KE4 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR :::::::::::::::::::::::::::::::::. :: NP_001 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTRPIV 430 440 450 >>XP_005245266 (OMIM: 252010,602985) PREDICTED: NADH deh (365 aa) initn: 2475 init1: 2475 opt: 2475 Z-score: 2884.1 bits: 542.6 E(85289): 6.6e-154 Smith-Waterman score: 2475; 100.0% identity (100.0% similar) in 365 aa overlap (99-463:1-365) 70 80 90 100 110 120 pF1KE4 VDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKT :::::::::::::::::::::::::::::: XP_005 MELSGEMVRKCDPHIGLLHRGTEKLIEYKT 10 20 30 130 140 150 160 170 180 pF1KE4 YLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 YLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVT 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE4 THALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 THALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFS 100 110 120 130 140 150 250 260 270 280 290 300 pF1KE4 KNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPY 160 170 180 190 200 210 310 320 330 340 350 360 pF1KE4 DVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKR 220 230 240 250 260 270 370 380 390 400 410 420 pF1KE4 AEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPG 280 290 300 310 320 330 430 440 450 460 pF1KE4 FAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR ::::::::::::::::::::::::::::::::::: XP_005 FAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 340 350 360 463 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:35:29 2016 done: Sun Nov 6 00:35:30 2016 Total Scan time: 8.160 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]