FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB3484, 211 aa 1>>>pF1KB3484 211 - 211 aa - 211 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7478+/-0.000325; mu= 13.2923+/- 0.020 mean_var=87.9727+/-16.936, 0's: 0 Z-trim(116.5): 22 B-trim: 0 in 0/54 Lambda= 0.136742 statistics sampled from 27768 (27790) to 27768 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.326), width: 16 Scan time: 5.390 The best scores are: opt bits E(85289) NP_003816 (OMIM: 602534) synaptosomal-associated p ( 211) 1383 282.0 4.8e-76 XP_016878182 (OMIM: 602534) PREDICTED: synaptosoma ( 213) 1254 256.6 2.2e-68 XP_016878183 (OMIM: 602534) PREDICTED: synaptosoma ( 213) 1254 256.6 2.2e-68 XP_006720788 (OMIM: 602534) PREDICTED: synaptosoma ( 222) 825 172.0 6.8e-43 XP_016878181 (OMIM: 602534) PREDICTED: synaptosoma ( 224) 696 146.5 3.1e-35 NP_570710 (OMIM: 602534) synaptosomal-associated p ( 158) 581 123.7 1.6e-28 XP_005260865 (OMIM: 600322,616330) PREDICTED: syna ( 206) 488 105.5 6.6e-23 NP_001309834 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23 NP_001309839 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23 NP_001309837 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23 NP_001309833 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23 NP_001309835 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23 NP_001309832 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23 NP_001309838 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23 NP_001309836 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23 NP_570824 (OMIM: 600322,616330) synaptosomal-assoc ( 206) 488 105.5 6.6e-23 XP_016883512 (OMIM: 600322,616330) PREDICTED: syna ( 136) 476 103.0 2.5e-22 NP_003072 (OMIM: 600322,616330) synaptosomal-assoc ( 206) 466 101.1 1.3e-21 XP_016883511 (OMIM: 600322,616330) PREDICTED: syna ( 206) 466 101.1 1.3e-21 XP_016883510 (OMIM: 600322,616330) PREDICTED: syna ( 206) 466 101.1 1.3e-21 NP_001309831 (OMIM: 600322,616330) synaptosomal-as ( 206) 466 101.1 1.3e-21 >>NP_003816 (OMIM: 602534) synaptosomal-associated prote (211 aa) initn: 1383 init1: 1383 opt: 1383 Z-score: 1486.3 bits: 282.0 E(85289): 4.8e-76 Smith-Waterman score: 1383; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211) 10 20 30 40 50 60 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB3 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ 130 140 150 160 170 180 190 200 210 pF1KB3 NPQIKRITDKADTNRDRIDIANARAKKLIDS ::::::::::::::::::::::::::::::: NP_003 NPQIKRITDKADTNRDRIDIANARAKKLIDS 190 200 210 >>XP_016878182 (OMIM: 602534) PREDICTED: synaptosomal-as (213 aa) initn: 1254 init1: 1254 opt: 1254 Z-score: 1348.7 bits: 256.6 E(85289): 2.2e-68 Smith-Waterman score: 1254; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190) 10 20 30 40 50 60 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB3 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ 130 140 150 160 170 180 190 200 210 pF1KB3 NPQIKRITDKADTNRDRIDIANARAKKLIDS :::::::::: XP_016 NPQIKRITDKVKAFYCHKKMRHPVQCFSNRHLC 190 200 210 >>XP_016878183 (OMIM: 602534) PREDICTED: synaptosomal-as (213 aa) initn: 1254 init1: 1254 opt: 1254 Z-score: 1348.7 bits: 256.6 E(85289): 2.2e-68 Smith-Waterman score: 1254; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190) 10 20 30 40 50 60 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB3 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ 130 140 150 160 170 180 190 200 210 pF1KB3 NPQIKRITDKADTNRDRIDIANARAKKLIDS :::::::::: XP_016 NPQIKRITDKVKAFYCHKKMRHPVQCFSNRHLC 190 200 210 >>XP_006720788 (OMIM: 602534) PREDICTED: synaptosomal-as (222 aa) initn: 806 init1: 806 opt: 825 Z-score: 891.1 bits: 172.0 E(85289): 6.8e-43 Smith-Waterman score: 1351; 95.0% identity (95.0% similar) in 222 aa overlap (1-211:1-222) 10 20 30 40 50 60 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD 10 20 30 40 50 60 70 80 90 100 pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNR-----------TKNFESGKAYKTTWGDGGEN ::::::::::::::::::::::::::::: :::::::::::::::::::: XP_006 QINKDMRETEKTLTELNKCCGLCVCPCNRFSDVGCFYETRTKNFESGKAYKTTWGDGGEN 70 80 90 100 110 120 110 120 130 140 150 160 pF1KB3 SPCNVVSKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 SPCNVVSKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDM 130 140 150 160 170 180 170 180 190 200 210 pF1KB3 ALNIGNEIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS :::::::::::::::::::::::::::::::::::::::::: XP_006 ALNIGNEIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS 190 200 210 220 >>XP_016878181 (OMIM: 602534) PREDICTED: synaptosomal-as (224 aa) initn: 677 init1: 677 opt: 696 Z-score: 753.5 bits: 146.5 E(85289): 3.1e-35 Smith-Waterman score: 1222; 94.5% identity (94.5% similar) in 201 aa overlap (1-190:1-201) 10 20 30 40 50 60 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD 10 20 30 40 50 60 70 80 90 100 pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNR-----------TKNFESGKAYKTTWGDGGEN ::::::::::::::::::::::::::::: :::::::::::::::::::: XP_016 QINKDMRETEKTLTELNKCCGLCVCPCNRFSDVGCFYETRTKNFESGKAYKTTWGDGGEN 70 80 90 100 110 120 110 120 130 140 150 160 pF1KB3 SPCNVVSKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SPCNVVSKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDM 130 140 150 160 170 180 170 180 190 200 210 pF1KB3 ALNIGNEIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS ::::::::::::::::::::: XP_016 ALNIGNEIDAQNPQIKRITDKVKAFYCHKKMRHPVQCFSNRHLC 190 200 210 220 >>NP_570710 (OMIM: 602534) synaptosomal-associated prote (158 aa) initn: 615 init1: 581 opt: 581 Z-score: 633.0 bits: 123.7 E(85289): 1.6e-28 Smith-Waterman score: 892; 74.4% identity (74.4% similar) in 211 aa overlap (1-211:1-158) 10 20 30 40 50 60 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_570 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG :::::::::::::::::::::::::::: NP_570 QINKDMRETEKTLTELNKCCGLCVCPCNS------------------------------- 70 80 130 140 150 160 170 180 pF1KB3 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ :::::::::::::::::::::::::::::::::::::: NP_570 ----------------------ITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ 90 100 110 120 190 200 210 pF1KB3 NPQIKRITDKADTNRDRIDIANARAKKLIDS ::::::::::::::::::::::::::::::: NP_570 NPQIKRITDKADTNRDRIDIANARAKKLIDS 130 140 150 >>XP_005260865 (OMIM: 600322,616330) PREDICTED: synaptos (206 aa) initn: 760 init1: 426 opt: 488 Z-score: 532.2 bits: 105.5 E(85289): 6.6e-23 Smith-Waterman score: 784; 60.5% identity (82.9% similar) in 205 aa overlap (7-211:12-205) 10 20 30 40 50 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI ::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.:: XP_005 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB3 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVV :::.:::::::.:.::.::.:.: :::::::::. : :. ::: .:: :. .:: XP_005 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLK---SSDAYKKAWG----NNQDGVV 70 80 90 100 110 120 130 140 150 160 170 pF1KB3 SKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGN ..::. :.. . :. : :::.:.:.::::::.::.::: ::..:.:::. :::..:: XP_005 ASQPARVVDEREQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGN 120 130 140 150 160 180 190 200 210 pF1KB3 EIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS :::.:: :: :: .:::.:. ::: :: :: :.. : XP_005 EIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG 170 180 190 200 >>NP_001309834 (OMIM: 600322,616330) synaptosomal-associ (206 aa) initn: 760 init1: 426 opt: 488 Z-score: 532.2 bits: 105.5 E(85289): 6.6e-23 Smith-Waterman score: 784; 60.5% identity (82.9% similar) in 205 aa overlap (7-211:12-205) 10 20 30 40 50 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI ::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.:: NP_001 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB3 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVV :::.:::::::.:.::.::.:.: :::::::::. : :. ::: .:: :. .:: NP_001 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLK---SSDAYKKAWG----NNQDGVV 70 80 90 100 110 120 130 140 150 160 170 pF1KB3 SKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGN ..::. :.. . :. : :::.:.:.::::::.::.::: ::..:.:::. :::..:: NP_001 ASQPARVVDEREQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGN 120 130 140 150 160 180 190 200 210 pF1KB3 EIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS :::.:: :: :: .:::.:. ::: :: :: :.. : NP_001 EIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG 170 180 190 200 >>NP_001309839 (OMIM: 600322,616330) synaptosomal-associ (206 aa) initn: 760 init1: 426 opt: 488 Z-score: 532.2 bits: 105.5 E(85289): 6.6e-23 Smith-Waterman score: 784; 60.5% identity (82.9% similar) in 205 aa overlap (7-211:12-205) 10 20 30 40 50 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI ::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.:: NP_001 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB3 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVV :::.:::::::.:.::.::.:.: :::::::::. : :. ::: .:: :. .:: NP_001 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLK---SSDAYKKAWG----NNQDGVV 70 80 90 100 110 120 130 140 150 160 170 pF1KB3 SKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGN ..::. :.. . :. : :::.:.:.::::::.::.::: ::..:.:::. :::..:: NP_001 ASQPARVVDEREQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGN 120 130 140 150 160 180 190 200 210 pF1KB3 EIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS :::.:: :: :: .:::.:. ::: :: :: :.. : NP_001 EIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG 170 180 190 200 >>NP_001309837 (OMIM: 600322,616330) synaptosomal-associ (206 aa) initn: 760 init1: 426 opt: 488 Z-score: 532.2 bits: 105.5 E(85289): 6.6e-23 Smith-Waterman score: 784; 60.5% identity (82.9% similar) in 205 aa overlap (7-211:12-205) 10 20 30 40 50 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI ::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.:: NP_001 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB3 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVV :::.:::::::.:.::.::.:.: :::::::::. : :. ::: .:: :. .:: NP_001 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLK---SSDAYKKAWG----NNQDGVV 70 80 90 100 110 120 130 140 150 160 170 pF1KB3 SKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGN ..::. :.. . :. : :::.:.:.::::::.::.::: ::..:.:::. :::..:: NP_001 ASQPARVVDEREQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGN 120 130 140 150 160 180 190 200 210 pF1KB3 EIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS :::.:: :: :: .:::.:. ::: :: :: :.. : NP_001 EIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG 170 180 190 200 211 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 05:10:09 2016 done: Sat Nov 5 05:10:10 2016 Total Scan time: 5.390 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]