FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB3484, 211 aa 1>>>pF1KB3484 211 - 211 aa - 211 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9765+/-0.000756; mu= 11.6894+/- 0.046 mean_var=84.5946+/-16.151, 0's: 0 Z-trim(109.4): 11 B-trim: 0 in 0/53 Lambda= 0.139445 statistics sampled from 10880 (10890) to 10880 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.335), width: 16 Scan time: 2.110 The best scores are: opt bits E(32554) CCDS10087.1 SNAP23 gene_id:8773|Hs108|chr15 ( 211) 1383 287.3 4.7e-78 CCDS10088.1 SNAP23 gene_id:8773|Hs108|chr15 ( 158) 581 125.9 1.4e-29 CCDS13110.1 SNAP25 gene_id:6616|Hs108|chr20 ( 206) 488 107.2 7.4e-24 CCDS13109.1 SNAP25 gene_id:6616|Hs108|chr20 ( 206) 466 102.8 1.6e-22 >>CCDS10087.1 SNAP23 gene_id:8773|Hs108|chr15 (211 aa) initn: 1383 init1: 1383 opt: 1383 Z-score: 1514.7 bits: 287.3 E(32554): 4.7e-78 Smith-Waterman score: 1383; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211) 10 20 30 40 50 60 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB3 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ 130 140 150 160 170 180 190 200 210 pF1KB3 NPQIKRITDKADTNRDRIDIANARAKKLIDS ::::::::::::::::::::::::::::::: CCDS10 NPQIKRITDKADTNRDRIDIANARAKKLIDS 190 200 210 >>CCDS10088.1 SNAP23 gene_id:8773|Hs108|chr15 (158 aa) initn: 615 init1: 581 opt: 581 Z-score: 644.6 bits: 125.9 E(32554): 1.4e-29 Smith-Waterman score: 892; 74.4% identity (74.4% similar) in 211 aa overlap (1-211:1-158) 10 20 30 40 50 60 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG :::::::::::::::::::::::::::: CCDS10 QINKDMRETEKTLTELNKCCGLCVCPCNS------------------------------- 70 80 130 140 150 160 170 180 pF1KB3 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ :::::::::::::::::::::::::::::::::::::: CCDS10 ----------------------ITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ 90 100 110 120 190 200 210 pF1KB3 NPQIKRITDKADTNRDRIDIANARAKKLIDS ::::::::::::::::::::::::::::::: CCDS10 NPQIKRITDKADTNRDRIDIANARAKKLIDS 130 140 150 >>CCDS13110.1 SNAP25 gene_id:6616|Hs108|chr20 (206 aa) initn: 760 init1: 426 opt: 488 Z-score: 541.8 bits: 107.2 E(32554): 7.4e-24 Smith-Waterman score: 784; 60.5% identity (82.9% similar) in 205 aa overlap (7-211:12-205) 10 20 30 40 50 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI ::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.:: CCDS13 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB3 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVV :::.:::::::.:.::.::.:.: :::::::::. : :. ::: .:: :. .:: CCDS13 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLK---SSDAYKKAWG----NNQDGVV 70 80 90 100 110 120 130 140 150 160 170 pF1KB3 SKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGN ..::. :.. . :. : :::.:.:.::::::.::.::: ::..:.:::. :::..:: CCDS13 ASQPARVVDEREQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGN 120 130 140 150 160 180 190 200 210 pF1KB3 EIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS :::.:: :: :: .:::.:. ::: :: :: :.. : CCDS13 EIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG 170 180 190 200 >>CCDS13109.1 SNAP25 gene_id:6616|Hs108|chr20 (206 aa) initn: 720 init1: 404 opt: 466 Z-score: 517.9 bits: 102.8 E(32554): 1.6e-22 Smith-Waterman score: 762; 57.6% identity (82.4% similar) in 205 aa overlap (7-211:12-205) 10 20 30 40 50 pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI ::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.:. CCDS13 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB3 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVV :::...::.::.:.::.: .:.::::: .::::. : :. ::: .:: :. .:: CCDS13 EEGMNHINQDMKEAEKNLKDLGKCCGLFICPCNKLK---SSDAYKKAWG----NNQDGVV 70 80 90 100 110 120 130 140 150 160 170 pF1KB3 SKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGN ..::. :.. . :. : :::.:.:.::::::.::.::: ::..:.:::. :::..:: CCDS13 ASQPARVVDEREQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGN 120 130 140 150 160 180 190 200 210 pF1KB3 EIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS :::.:: :: :: .:::.:. ::: :: :: :.. : CCDS13 EIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG 170 180 190 200 211 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 05:10:08 2016 done: Sat Nov 5 05:10:09 2016 Total Scan time: 2.110 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]