FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6309, 372 aa 1>>>pF1KE6309 372 - 372 aa - 372 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2366+/-0.00096; mu= 16.2769+/- 0.057 mean_var=57.6572+/-11.452, 0's: 0 Z-trim(103.2): 24 B-trim: 0 in 0/48 Lambda= 0.168907 statistics sampled from 7273 (7281) to 7273 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.591), E-opt: 0.2 (0.224), width: 16 Scan time: 2.250 The best scores are: opt bits E(32554) CCDS4474.1 GMDS gene_id:2762|Hs108|chr6 ( 372) 2492 615.8 1.9e-176 CCDS58994.1 GMDS gene_id:2762|Hs108|chr6 ( 342) 2257 558.5 3e-159 >>CCDS4474.1 GMDS gene_id:2762|Hs108|chr6 (372 aa) initn: 2492 init1: 2492 opt: 2492 Z-score: 3281.3 bits: 615.8 E(32554): 1.9e-176 Smith-Waterman score: 2492; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372) 10 20 30 40 50 60 pF1KE6 MAHAPARCPSARGSGDGEMGKPRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MAHAPARCPSARGSGDGEMGKPRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 NTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 AEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 AAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 GNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 GNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 KNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 KNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVH 310 320 330 340 350 360 370 pF1KE6 ADVELMRTNPNA :::::::::::: CCDS44 ADVELMRTNPNA 370 >>CCDS58994.1 GMDS gene_id:2762|Hs108|chr6 (342 aa) initn: 2257 init1: 2257 opt: 2257 Z-score: 2972.4 bits: 558.5 E(32554): 3e-159 Smith-Waterman score: 2257; 100.0% identity (100.0% similar) in 338 aa overlap (35-372:5-342) 10 20 30 40 50 60 pF1KE6 PARCPSARGSGDGEMGKPRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGR :::::::::::::::::::::::::::::: CCDS58 MCKMDGSYLAEFLLEKGYEVHGIVRRSSSFNTGR 10 20 30 70 80 90 100 110 120 pF1KE6 IEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 IEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYT 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE6 ADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 ADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKL 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE6 YAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 YAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLD 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE6 AKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 AKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNEN 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE6 EVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 EVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVE 280 290 300 310 320 330 370 pF1KE6 LMRTNPNA :::::::: CCDS58 LMRTNPNA 340 372 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:57:46 2016 done: Tue Nov 8 11:57:46 2016 Total Scan time: 2.250 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]