FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4309, 318 aa
  1>>>pF1KE4309 318 - 318 aa - 318 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0831+/-0.00093; mu= 16.4084+/- 0.056
 mean_var=56.1376+/-11.244, 0's: 0 Z-trim(103.6): 14  B-trim: 0 in 0/49
 Lambda= 0.171178
 statistics sampled from 7486 (7494) to 7486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.23), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS3488.1 SGCB gene_id:6443|Hs108|chr4            ( 318) 2076 521.0 4.9e-148


>>CCDS3488.1 SGCB gene_id:6443|Hs108|chr4                 (318 aa)
 initn: 2076 init1: 2076 opt: 2076  Z-score: 2771.2  bits: 521.0 E(32554): 4.9e-148
Smith-Waterman score: 2076; 100.0% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KE4 MAAAAAAAAEQQSSNGPVKKSMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAAAAAAAAEQQSSNGPVKKSMREKAVERRSVNKEHNSNFKAGYIPIDEDRLHKTGLRGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 KGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 PLYKSTVGGRRNENLVITGNNQPIVFQQGTTKLSVENNKTSITSDIGMQFFDPRTQNILF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PLYKSTVGGRRNENLVITGNNQPIVFQQGTTKLSVENNKTSITSDIGMQFFDPRTQNILF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 STDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 STDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 FHMGGNMELKAENSIILNGSVMVSTTRLPSSSSGDQLGSGDWVRYKLCMCADGTLFKVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FHMGGNMELKAENSIILNGSVMVSTTRLPSSSSGDQLGSGDWVRYKLCMCADGTLFKVQV
              250       260       270       280       290       300

              310        
pF1KE4 TSQNMGCQISDNPCGNTH
       ::::::::::::::::::
CCDS34 TSQNMGCQISDNPCGNTH
              310        




318 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 16:35:54 2016 done: Mon Nov  7 16:35:55 2016
 Total Scan time:  2.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]