FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6706, 1004 aa 1>>>pF1KE6706 1004 - 1004 aa - 1004 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6409+/-0.00103; mu= 18.9816+/- 0.062 mean_var=62.6632+/-11.978, 0's: 0 Z-trim(103.1): 24 B-trim: 18 in 1/47 Lambda= 0.162020 statistics sampled from 7242 (7247) to 7242 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.583), E-opt: 0.2 (0.223), width: 16 Scan time: 2.770 The best scores are: opt bits E(32554) CCDS3140.1 HPS3 gene_id:84343|Hs108|chr3 (1004) 6661 1566.4 0 CCDS77836.1 HPS3 gene_id:84343|Hs108|chr3 ( 839) 5064 1193.1 0 >>CCDS3140.1 HPS3 gene_id:84343|Hs108|chr3 (1004 aa) initn: 6661 init1: 6661 opt: 6661 Z-score: 8403.1 bits: 1566.4 E(32554): 0 Smith-Waterman score: 6661; 100.0% identity (100.0% similar) in 1004 aa overlap (1-1004:1-1004) 10 20 30 40 50 60 pF1KE6 MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFST 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LGRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTENSRVCIRMIGHNVEGPFSKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LGRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTENSRVCIRMIGHNVEGPFSKA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FRDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFSLKYQIINEEFSLLDFERSLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 FRDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFSLKYQIINEEFSLLDFERSLI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 IHIDNITPVEVSFCVGYVAVMSDLEVLIVKLESGPKNGERVHHHPHKTNNRIRRTEEGIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 IHIDNITPVEVSFCVGYVAVMSDLEVLIVKLESGPKNGERVHHHPHKTNNRIRRTEEGIS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 NEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 NEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 ISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 ISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 VELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 VELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 SMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPP 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE6 VAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 VAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLE 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE6 PGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 PGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQ 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE6 KYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 KYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAM 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE6 SYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQR 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE6 KGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 KGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVD 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE6 FWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 FWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPW 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE6 VHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 VHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTR 850 860 870 880 890 900 910 920 930 940 950 960 pF1KE6 LKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSS 910 920 930 940 950 960 970 980 990 1000 pF1KE6 LKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT :::::::::::::::::::::::::::::::::::::::::::: CCDS31 LKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT 970 980 990 1000 >>CCDS77836.1 HPS3 gene_id:84343|Hs108|chr3 (839 aa) initn: 5064 init1: 5064 opt: 5064 Z-score: 6386.9 bits: 1193.1 E(32554): 0 Smith-Waterman score: 5214; 83.6% identity (83.6% similar) in 1004 aa overlap (1-1004:1-839) 10 20 30 40 50 60 pF1KE6 MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFST 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LGRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTENSRVCIRMIGHNVEGPFSKA ::::::::::::: CCDS77 LGRVLRLAYSEAG----------------------------------------------- 70 130 140 150 160 170 180 pF1KE6 FRDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFSLKYQIINEEFSLLDFERSLI CCDS77 ------------------------------------------------------------ 190 200 210 220 230 240 pF1KE6 IHIDNITPVEVSFCVGYVAVMSDLEVLIVKLESGPKNGERVHHHPHKTNNRIRRTEEGIS :: CCDS77 ----------------------------------------------------------IS 250 260 270 280 290 300 pF1KE6 NEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 NEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPD 80 90 100 110 120 130 310 320 330 340 350 360 pF1KE6 ISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 ISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKS 140 150 160 170 180 190 370 380 390 400 410 420 pF1KE6 VELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 VELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSAAAAREEDPYMDTTLKACPPV 200 210 220 230 240 250 430 440 450 460 470 480 pF1KE6 SMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 SMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPP 260 270 280 290 300 310 490 500 510 520 530 540 pF1KE6 VAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 VAEAGWNLYIVNTISPVQLYKEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLE 320 330 340 350 360 370 550 560 570 580 590 600 pF1KE6 PGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQ 380 390 400 410 420 430 610 620 630 640 650 660 pF1KE6 KYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 KYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAM 440 450 460 470 480 490 670 680 690 700 710 720 pF1KE6 SYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 SYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSHSEMKLVCGFILEPRLLIQQR 500 510 520 530 540 550 730 740 750 760 770 780 pF1KE6 KGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 KGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVD 560 570 580 590 600 610 790 800 810 820 830 840 pF1KE6 FWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 FWEAQLVACLPDVVLQELFFKLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPW 620 630 640 650 660 670 850 860 870 880 890 900 pF1KE6 VHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 VHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTR 680 690 700 710 720 730 910 920 930 940 950 960 pF1KE6 LKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 LKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSS 740 750 760 770 780 790 970 980 990 1000 pF1KE6 LKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT :::::::::::::::::::::::::::::::::::::::::::: CCDS77 LKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRKKPLT 800 810 820 830 1004 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:33:07 2016 done: Tue Nov 8 15:33:08 2016 Total Scan time: 2.770 Total Display time: 0.050 Function used was FASTA [36.3.4 Apr, 2011]