FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4458, 475 aa
  1>>>pF1KE4458 475 - 475 aa - 475 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2695+/-0.000435; mu= 17.7915+/- 0.027
 mean_var=64.7915+/-13.335, 0's: 0 Z-trim(109.8): 87  B-trim: 386 in 1/55
 Lambda= 0.159336
 statistics sampled from 18073 (18087) to 18073 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.566), E-opt: 0.2 (0.212), width:  16
 Scan time:  9.280

The best scores are:                                      opt bits E(85289)
NP_005848 (OMIM: 275210,606480,608612) CAAX prenyl ( 475) 3153 734.1  2e-211


>>NP_005848 (OMIM: 275210,606480,608612) CAAX prenyl pro  (475 aa)
 initn: 3153 init1: 3153 opt: 3153  Z-score: 3916.7  bits: 734.1 E(85289): 2e-211
Smith-Waterman score: 3153; 99.8% identity (100.0% similar) in 475 aa overlap (1-475:1-475)

               10        20        30        40        50        60
pF1KE4 MGMWASLDALWEMPAEKRIFGAVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGMWASLDALWEMPAEKRIFGAVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 SETFEKSRLYQLDKSTFSFWSGLYSETEGTLILLFGGIPYLWRLSGRFCGYAGFGPEYEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SETFEKSRLYQLDKSTFSFWSGLYSETEGTLILLFGGIPYLWRLSGRFCGYAGFGPEYEI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 TQSLVFLLLATLFSALAGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLP
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_005 TQSLVFLLLATLFSALTGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 VSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 MAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 EPRNEEEGNSEEIKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EPRNEEEGNSEEIKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 FLFAVLIGRKELFAAFGFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FLFAVLIGRKELFAAFGFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADA
              370       380       390       400       410       420

              430       440       450       460       470     
pF1KE4 FAKKLGKAKDLYSALIKLNKDNLGFPVSDWLFSMWHYSHPPLLERLQALKTMKQH
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FAKKLGKAKDLYSALIKLNKDNLGFPVSDWLFSMWHYSHPPLLERLQALKTMKQH
              430       440       450       460       470     




475 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:59:12 2016 done: Sun Nov  6 00:59:14 2016
 Total Scan time:  9.280 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]