FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5214, 215 aa 1>>>pF1KE5214 215 - 215 aa - 215 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2245+/-0.000759; mu= 15.1973+/- 0.046 mean_var=96.0581+/-19.689, 0's: 0 Z-trim(110.6): 55 B-trim: 0 in 0/54 Lambda= 0.130860 statistics sampled from 11650 (11700) to 11650 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.359), width: 16 Scan time: 1.480 The best scores are: opt bits E(32554) CCDS8390.1 SCN2B gene_id:6327|Hs108|chr11 ( 215) 1466 286.4 9.1e-78 CCDS8393.1 MPZL2 gene_id:10205|Hs108|chr11 ( 215) 324 70.8 7.3e-13 >>CCDS8390.1 SCN2B gene_id:6327|Hs108|chr11 (215 aa) initn: 1466 init1: 1466 opt: 1466 Z-score: 1509.6 bits: 286.4 E(32554): 9.1e-78 Smith-Waterman score: 1466; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215) 10 20 30 40 50 60 pF1KE5 MHRDAWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 MHRDAWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 KQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 KQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 DEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 DEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVV 130 140 150 160 170 180 190 200 210 pF1KE5 KCVRRKKEQKLSTDDLKTEEEGKTDGEGNPDDGAK ::::::::::::::::::::::::::::::::::: CCDS83 KCVRRKKEQKLSTDDLKTEEEGKTDGEGNPDDGAK 190 200 210 >>CCDS8393.1 MPZL2 gene_id:10205|Hs108|chr11 (215 aa) initn: 261 init1: 202 opt: 324 Z-score: 344.4 bits: 70.8 E(32554): 7.3e-13 Smith-Waterman score: 324; 27.9% identity (66.7% similar) in 201 aa overlap (9-207:8-204) 10 20 30 40 50 60 pF1KE5 MHRDAWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNH : .. : :..: . . : ..:. . .:...::.:::: :::.: :. CCDS83 MYGKSSTRAVLLLLGIQL--TALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGD 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 KQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPE ....:... .. :.. . ... .. ::.::: ..::: .::.:..: ..: . CCDS83 A-LTVTWNFRPLDGGPEQFVFYYHIDPFQPMSGRFKDRVSWDGNPERYDASILLWKLQFD 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 DEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVV :.: :.: . :::: :.:.:.:. . .:. .: :. ... ....:... CCDS83 DNGTYTCQVKNPPDVDGVIGEIRLSVVHTVRFSEIHFLALAIG-SACALMIIIVIVVVLF 120 130 140 150 160 170 190 200 210 pF1KE5 KCVRRKK--EQKLSTDDLKTEEEGKTDGEGNPDDGAK . :.:. :. .. ..:..:: . . : CCDS83 QHYRKKRWAERAHKVVEIKSKEEERLNQEKKVSVYLEDTD 180 190 200 210 215 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:34:25 2016 done: Mon Nov 7 22:34:25 2016 Total Scan time: 1.480 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]