FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1550, 847 aa 1>>>pF1KE1550 847 - 847 aa - 847 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.5798+/-0.00104; mu= 7.0540+/- 0.063 mean_var=190.6713+/-37.232, 0's: 0 Z-trim(110.5): 13 B-trim: 11 in 1/51 Lambda= 0.092882 statistics sampled from 11646 (11657) to 11646 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.358), width: 16 Scan time: 3.900 The best scores are: opt bits E(32554) CCDS11644.1 FTSJ3 gene_id:117246|Hs108|chr17 ( 847) 5514 751.9 1e-216 CCDS14295.1 FTSJ1 gene_id:24140|Hs108|chrX ( 327) 552 86.8 6.9e-17 CCDS14294.1 FTSJ1 gene_id:24140|Hs108|chrX ( 329) 538 84.9 2.5e-16 >>CCDS11644.1 FTSJ3 gene_id:117246|Hs108|chr17 (847 aa) initn: 5514 init1: 5514 opt: 5514 Z-score: 4004.2 bits: 751.9 E(32554): 1e-216 Smith-Waterman score: 5514; 99.8% identity (99.9% similar) in 847 aa overlap (1-847:1-847) 10 20 30 40 50 60 pF1KE1 MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VAAKFMPVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGAP ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: CCDS11 VAAKFMPVSSLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVDVVLNDGAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 NVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 NVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TKPQASRHESAEIFVVCQGFLAPDKVDSKFFDPKFAFKEVEVQAKTVTELVTKKKPKAEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TKPQASRHESAEIFVVCQGFLAPDKVDSKFFDPKFAFKEVEVQAKTVTELVTKKKPKAEG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 YAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDDEELAQHPATTEDIRVCCQDIRVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 YAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDDEELAQHPATTEDIRVCCQDIRVL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 GRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSGEEDEGDEEDSTAGTTKQPSKEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSGEEDEGDEEDSTAGTTKQPSKEEE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 EEEEEEQLNQTLAEMKAQEVAELKRKKKKLLREQRKQRERVELKMDLPGVSIADEGETGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 EEEEEEQLNQTLAEMKAQEVAELKRKKKKLLREQRKQRERVELKMDLPGVSIADEGETGM 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 FSLCTIRGHQLLEEVTQGDMSAADTFLSDLPRDDIYVSDVEDDGDDTSLDSDLDPEELAG ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 FSLSTIRGHQLLEEVTQGDMSAADTFLSDLPRDDIYVSDVEDDGDDTSLDSDLDPEELAG 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 VRGHQGLRDQKRMRLTEVQDDKEEEEEENPLLVPLEEKAVLQEEQANLWFSKGSFAGIED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VRGHQGLRDQKRMRLTEVQDDKEEEEEENPLLVPLEEKAVLQEEQANLWFSKGSFAGIED 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE1 DADEALEISQAQLLFENRRKGRQQQQKQQLPQTPPSCLKTEIMSPLYQDEAPKGTEASSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 DADEALEISQAQLLFENRRKGRQQQQKQQLPQTPPSCLKTEIMSPLYQDEAPKGTEASSG 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE1 TEAATGLEGEEKDGISDSDSSTSSEEEESWEPLRGKKRSRGPKSDDDGFEIVPIEDPAKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TEAATGLEGEEKDGISDSDSSTSSEEEESWEPLRGKKRSRGPKSDDDGFEIVPIEDPAKH 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE1 RILDPEGLALGAVIASSKKAKRDLIDNSFNRYTFNEDEGELPEWFVQEEKQHRIRQLPVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 RILDPEGLALGAVIASSKKAKRDLIDNSFNRYTFNEDEGELPEWFVQEEKQHRIRQLPVG 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE1 KKEVEHYRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 KKEVEHYRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVA 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE1 QLRSLYKKAGLGKEKRHVTYVVAKKGVGRKVRRPAGVRGHFKVVDSRMKKDQRAQQRKEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QLRSLYKKAGLGKEKRHVTYVVAKKGVGRKVRRPAGVRGHFKVVDSRMKKDQRAQQRKEQ 790 800 810 820 830 840 pF1KE1 KKKHKRK ::::::: CCDS11 KKKHKRK >>CCDS14295.1 FTSJ1 gene_id:24140|Hs108|chrX (327 aa) initn: 569 init1: 322 opt: 552 Z-score: 416.7 bits: 86.8 E(32554): 6.9e-17 Smith-Waterman score: 552; 39.3% identity (68.8% similar) in 234 aa overlap (5-232:2-235) 10 20 30 40 50 60 pF1KE1 MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQ :...:..:: .:.::::.:.:.::::::.::...::..: . .:::::::.: : CCDS14 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQ 10 20 30 40 50 70 80 90 100 110 pF1KE1 VAAKFM--PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDG : .. . :. .:.::: . :::.:: .: ::: . . ...: .:.:. :: CCDS14 VLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDG 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 APNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRV ::.: . : : ::.: : :: .: : :: :..:.::.:: : .: .: : CCDS14 APDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSV 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QATKPQASRHESAEIFVVCQGFLAPD----KVDSKFFDPKFAFKEVEVQAKTVTELVTKK .::..::. : : :.::::. :. ... ..: .. :.... .. .. .:: CCDS14 LCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDFNQLDGPTRIIVPFVTCG 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 KPKAEGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDDEELAQHPATTEDIRVCC CCDS14 DLSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISR 240 250 260 270 280 290 >>CCDS14294.1 FTSJ1 gene_id:24140|Hs108|chrX (329 aa) initn: 551 init1: 304 opt: 538 Z-score: 406.5 bits: 84.9 E(32554): 2.5e-16 Smith-Waterman score: 538; 39.0% identity (68.2% similar) in 236 aa overlap (5-232:2-237) 10 20 30 40 50 60 pF1KE1 MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQ :...:..:: .:.::::.:.:.::::::.::...::..: . .:::::::.: : CCDS14 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQ 10 20 30 40 50 70 80 90 100 110 pF1KE1 VAAKFM--PVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDG : .. . :. .:.::: . :::.:: .: ::: . . ...: .:.:. :: CCDS14 VLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDG 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 APNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRV ::.: . : : ::.: : :: .: : :: :..:.::.:: : .: .: : CCDS14 APDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSV 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QATKPQASRHESAEIFVVCQGFLAPD----KVDSKFFDPKFA--FKEVEVQAKTVTELVT .::..::. : : :.::::. :. ... ..: .. :.... .. .. .:: CCDS14 LCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVT 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 KKKPKAEGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDDEELAQHPATTEDIRV CCDS14 CGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPI 240 250 260 270 280 290 847 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:45:56 2016 done: Sun Nov 6 23:45:57 2016 Total Scan time: 3.900 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]