FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5714, 786 aa 1>>>pF1KE5714 786 - 786 aa - 786 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3913+/-0.000415; mu= 14.6432+/- 0.026 mean_var=84.9307+/-17.195, 0's: 0 Z-trim(113.3): 15 B-trim: 556 in 1/49 Lambda= 0.139169 statistics sampled from 22611 (22625) to 22611 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.265), width: 16 Scan time: 8.680 The best scores are: opt bits E(85289) NP_003162 (OMIM: 605122) ATP-dependent RNA helicas ( 786) 5261 1066.8 0 NP_001288612 (OMIM: 605122) ATP-dependent RNA heli ( 655) 4393 892.5 0 NP_001310513 (OMIM: 605122) ATP-dependent RNA heli ( 655) 4393 892.5 0 NP_001310515 (OMIM: 605122) ATP-dependent RNA heli ( 665) 4249 863.6 0 NP_001310514 (OMIM: 605122) ATP-dependent RNA heli ( 665) 4249 863.6 0 NP_001310517 (OMIM: 605122) ATP-dependent RNA heli ( 457) 3020 616.8 6.7e-176 NP_001310516 (OMIM: 605122) ATP-dependent RNA heli ( 457) 3020 616.8 6.7e-176 >>NP_003162 (OMIM: 605122) ATP-dependent RNA helicase SU (786 aa) initn: 5261 init1: 5261 opt: 5261 Z-score: 5706.9 bits: 1066.8 E(85289): 0 Smith-Waterman score: 5261; 100.0% identity (100.0% similar) in 786 aa overlap (1-786:1-786) 10 20 30 40 50 60 pF1KE5 MSFSRALLWARLPAGRQAGHRAAICSALRPHFGPFPGVLGQVSVLATASSSASGGSKIPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MSFSRALLWARLPAGRQAGHRAAICSALRPHFGPFPGVLGQVSVLATASSSASGGSKIPN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 TSLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 TSLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 HQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 HQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 KISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 KISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 FEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 FEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 RGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 RGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALES 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 LDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKE 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 GEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 GEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFS 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE5 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRN 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE5 EPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 EPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQK 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE5 ELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 ELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKA 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE5 TEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 TEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKK 730 740 750 760 770 780 pF1KE5 KEPDSD :::::: NP_003 KEPDSD >>NP_001288612 (OMIM: 605122) ATP-dependent RNA helicase (655 aa) initn: 4393 init1: 4393 opt: 4393 Z-score: 4766.3 bits: 892.5 E(85289): 0 Smith-Waterman score: 4393; 100.0% identity (100.0% similar) in 655 aa overlap (132-786:1-655) 110 120 130 140 150 160 pF1KE5 KRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPF :::::::::::::::::::::::::::::: NP_001 MQSHSLDVDIHIVLNDICFGAAHADDLFPF 10 20 30 170 180 190 200 210 220 pF1KE5 FLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKY 40 50 60 70 80 90 230 240 250 260 270 280 pF1KE5 FSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSV 100 110 120 130 140 150 290 300 310 320 330 340 pF1KE5 TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVE 160 170 180 190 200 210 350 360 370 380 390 400 pF1KE5 VRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPP 220 230 240 250 260 270 410 420 430 440 450 460 pF1KE5 GTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITT 280 290 300 310 320 330 470 480 490 500 510 520 pF1KE5 SQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFA 340 350 360 370 380 390 530 540 550 560 570 580 pF1KE5 YHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINK 400 410 420 430 440 450 590 600 610 620 630 640 pF1KE5 KQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWL 460 470 480 490 500 510 650 660 670 680 690 700 pF1KE5 SYRFMDMFPDASLIRDLQKELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SYRFMDMFPDASLIRDLQKELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSG 520 530 540 550 560 570 710 720 730 740 750 760 pF1KE5 TLKSQARRTRGTKALGSKATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TLKSQARRTRGTKALGSKATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTE 580 590 600 610 620 630 770 780 pF1KE5 HNKEKTESGTHPKGTRRKKKEPDSD ::::::::::::::::::::::::: NP_001 HNKEKTESGTHPKGTRRKKKEPDSD 640 650 >>NP_001310513 (OMIM: 605122) ATP-dependent RNA helicase (655 aa) initn: 4393 init1: 4393 opt: 4393 Z-score: 4766.3 bits: 892.5 E(85289): 0 Smith-Waterman score: 4393; 100.0% identity (100.0% similar) in 655 aa overlap (132-786:1-655) 110 120 130 140 150 160 pF1KE5 KRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPF :::::::::::::::::::::::::::::: NP_001 MQSHSLDVDIHIVLNDICFGAAHADDLFPF 10 20 30 170 180 190 200 210 220 pF1KE5 FLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKY 40 50 60 70 80 90 230 240 250 260 270 280 pF1KE5 FSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSV 100 110 120 130 140 150 290 300 310 320 330 340 pF1KE5 TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVE 160 170 180 190 200 210 350 360 370 380 390 400 pF1KE5 VRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPP 220 230 240 250 260 270 410 420 430 440 450 460 pF1KE5 GTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITT 280 290 300 310 320 330 470 480 490 500 510 520 pF1KE5 SQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFA 340 350 360 370 380 390 530 540 550 560 570 580 pF1KE5 YHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINK 400 410 420 430 440 450 590 600 610 620 630 640 pF1KE5 KQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWL 460 470 480 490 500 510 650 660 670 680 690 700 pF1KE5 SYRFMDMFPDASLIRDLQKELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SYRFMDMFPDASLIRDLQKELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSG 520 530 540 550 560 570 710 720 730 740 750 760 pF1KE5 TLKSQARRTRGTKALGSKATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TLKSQARRTRGTKALGSKATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTE 580 590 600 610 620 630 770 780 pF1KE5 HNKEKTESGTHPKGTRRKKKEPDSD ::::::::::::::::::::::::: NP_001 HNKEKTESGTHPKGTRRKKKEPDSD 640 650 >>NP_001310515 (OMIM: 605122) ATP-dependent RNA helicase (665 aa) initn: 4249 init1: 4249 opt: 4249 Z-score: 4609.9 bits: 863.6 E(85289): 0 Smith-Waterman score: 4249; 100.0% identity (100.0% similar) in 634 aa overlap (153-786:32-665) 130 140 150 160 170 180 pF1KE5 AFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLRKI :::::::::::::::::::::::::::::: NP_001 IFASVQALECSGSVSAQCVASTSWAQAILPAHADDLFPFFLRHAKQIFPVLDCKDDLRKI 10 20 30 40 50 60 190 200 210 220 230 240 pF1KE5 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 70 80 90 100 110 120 250 260 270 280 290 300 pF1KE5 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 130 140 150 160 170 180 310 320 330 340 350 360 pF1KE5 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD 190 200 210 220 230 240 370 380 390 400 410 420 pF1KE5 NLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILV 250 260 270 280 290 300 430 440 450 460 470 480 pF1KE5 ATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE 310 320 330 340 350 360 490 500 510 520 530 540 pF1KE5 VTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQV 370 380 390 400 410 420 550 560 570 580 590 600 pF1KE5 DGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEP 430 440 450 460 470 480 610 620 630 640 650 660 pF1KE5 LTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKEL 490 500 510 520 530 540 670 680 690 700 710 720 pF1KE5 DGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKATE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKATE 550 560 570 580 590 600 730 740 750 760 770 780 pF1KE5 PPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKKKE 610 620 630 640 650 660 pF1KE5 PDSD :::: NP_001 PDSD >>NP_001310514 (OMIM: 605122) ATP-dependent RNA helicase (665 aa) initn: 4249 init1: 4249 opt: 4249 Z-score: 4609.9 bits: 863.6 E(85289): 0 Smith-Waterman score: 4249; 100.0% identity (100.0% similar) in 634 aa overlap (153-786:32-665) 130 140 150 160 170 180 pF1KE5 AFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLRKI :::::::::::::::::::::::::::::: NP_001 IFASVQALECSGSVSAQCVASTSWAQAILPAHADDLFPFFLRHAKQIFPVLDCKDDLRKI 10 20 30 40 50 60 190 200 210 220 230 240 pF1KE5 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 70 80 90 100 110 120 250 260 270 280 290 300 pF1KE5 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 130 140 150 160 170 180 310 320 330 340 350 360 pF1KE5 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD 190 200 210 220 230 240 370 380 390 400 410 420 pF1KE5 NLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILV 250 260 270 280 290 300 430 440 450 460 470 480 pF1KE5 ATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE 310 320 330 340 350 360 490 500 510 520 530 540 pF1KE5 VTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQV 370 380 390 400 410 420 550 560 570 580 590 600 pF1KE5 DGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEP 430 440 450 460 470 480 610 620 630 640 650 660 pF1KE5 LTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKEL 490 500 510 520 530 540 670 680 690 700 710 720 pF1KE5 DGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKATE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKATE 550 560 570 580 590 600 730 740 750 760 770 780 pF1KE5 PPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKKKE 610 620 630 640 650 660 pF1KE5 PDSD :::: NP_001 PDSD >>NP_001310517 (OMIM: 605122) ATP-dependent RNA helicase (457 aa) initn: 3020 init1: 3020 opt: 3020 Z-score: 3279.0 bits: 616.8 E(85289): 6.7e-176 Smith-Waterman score: 3020; 100.0% identity (100.0% similar) in 457 aa overlap (330-786:1-457) 300 310 320 330 340 350 pF1KE5 ARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALE :::::::::::::::::::::::::::::: NP_001 MELMYTTGEEVEVRDYKRLTPISVLDHALE 10 20 30 360 370 380 390 400 410 pF1KE5 SLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK 40 50 60 70 80 90 420 430 440 450 460 470 pF1KE5 ILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFK 100 110 120 130 140 150 480 490 500 510 520 530 pF1KE5 EGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDF 160 170 180 190 200 210 540 550 560 570 580 590 pF1KE5 SQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 220 230 240 250 260 270 600 610 620 630 640 650 pF1KE5 NEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQ 280 290 300 310 320 330 660 670 680 690 700 710 pF1KE5 KELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSK 340 350 360 370 380 390 720 730 740 750 760 770 pF1KE5 ATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRK 400 410 420 430 440 450 780 pF1KE5 KKEPDSD ::::::: NP_001 KKEPDSD >>NP_001310516 (OMIM: 605122) ATP-dependent RNA helicase (457 aa) initn: 3020 init1: 3020 opt: 3020 Z-score: 3279.0 bits: 616.8 E(85289): 6.7e-176 Smith-Waterman score: 3020; 100.0% identity (100.0% similar) in 457 aa overlap (330-786:1-457) 300 310 320 330 340 350 pF1KE5 ARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALE :::::::::::::::::::::::::::::: NP_001 MELMYTTGEEVEVRDYKRLTPISVLDHALE 10 20 30 360 370 380 390 400 410 pF1KE5 SLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK 40 50 60 70 80 90 420 430 440 450 460 470 pF1KE5 ILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFK 100 110 120 130 140 150 480 490 500 510 520 530 pF1KE5 EGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDF 160 170 180 190 200 210 540 550 560 570 580 590 pF1KE5 SQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 220 230 240 250 260 270 600 610 620 630 640 650 pF1KE5 NEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQ 280 290 300 310 320 330 660 670 680 690 700 710 pF1KE5 KELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSK 340 350 360 370 380 390 720 730 740 750 760 770 pF1KE5 ATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRK 400 410 420 430 440 450 780 pF1KE5 KKEPDSD ::::::: NP_001 KKEPDSD 786 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 06:00:22 2016 done: Tue Nov 8 06:00:23 2016 Total Scan time: 8.680 Total Display time: 0.090 Function used was FASTA [36.3.4 Apr, 2011]