FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5123, 153 aa 1>>>pF1KE5123 153 - 153 aa - 153 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3692+/-0.000359; mu= 11.0090+/- 0.022 mean_var=56.1104+/-11.159, 0's: 0 Z-trim(112.7): 9 B-trim: 0 in 0/49 Lambda= 0.171219 statistics sampled from 21698 (21706) to 21698 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.254), width: 16 Scan time: 4.640 The best scores are: opt bits E(85289) NP_065123 (OMIM: 605782) eukaryotic translation in ( 153) 1027 261.6 3.5e-70 NP_001961 (OMIM: 600187) eukaryotic translation in ( 154) 865 221.6 3.9e-58 XP_005256566 (OMIM: 600187) PREDICTED: eukaryotic ( 154) 865 221.6 3.9e-58 NP_001137233 (OMIM: 600187) eukaryotic translation ( 154) 865 221.6 3.9e-58 NP_001137234 (OMIM: 600187) eukaryotic translation ( 154) 865 221.6 3.9e-58 NP_001137232 (OMIM: 600187) eukaryotic translation ( 184) 865 221.6 4.6e-58 >>NP_065123 (OMIM: 605782) eukaryotic translation initia (153 aa) initn: 1027 init1: 1027 opt: 1027 Z-score: 1381.0 bits: 261.6 E(85289): 3.5e-70 Smith-Waterman score: 1027; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153) 10 20 30 40 50 60 pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK ::::::::::::::::::::::::::::::::: NP_065 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK 130 140 150 >>NP_001961 (OMIM: 600187) eukaryotic translation initia (154 aa) initn: 865 init1: 865 opt: 865 Z-score: 1164.6 bits: 221.6 E(85289): 3.9e-58 Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG :::..:: :::::::.:.:::::::::::::::::::::::::::::::::::::::::: NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG ::::::::::::::::::::::::::::.::: ::::::::: ..:::::::.::::.:: NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK :::: ::. ::.. ..:. ::.:: ::::: NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK 130 140 150 >>XP_005256566 (OMIM: 600187) PREDICTED: eukaryotic tran (154 aa) initn: 865 init1: 865 opt: 865 Z-score: 1164.6 bits: 221.6 E(85289): 3.9e-58 Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG :::..:: :::::::.:.:::::::::::::::::::::::::::::::::::::::::: XP_005 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG ::::::::::::::::::::::::::::.::: ::::::::: ..:::::::.::::.:: XP_005 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK :::: ::. ::.. ..:. ::.:: ::::: XP_005 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK 130 140 150 >>NP_001137233 (OMIM: 600187) eukaryotic translation ini (154 aa) initn: 865 init1: 865 opt: 865 Z-score: 1164.6 bits: 221.6 E(85289): 3.9e-58 Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG :::..:: :::::::.:.:::::::::::::::::::::::::::::::::::::::::: NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG ::::::::::::::::::::::::::::.::: ::::::::: ..:::::::.::::.:: NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK :::: ::. ::.. ..:. ::.:: ::::: NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK 130 140 150 >>NP_001137234 (OMIM: 600187) eukaryotic translation ini (154 aa) initn: 865 init1: 865 opt: 865 Z-score: 1164.6 bits: 221.6 E(85289): 3.9e-58 Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG :::..:: :::::::.:.:::::::::::::::::::::::::::::::::::::::::: NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG ::::::::::::::::::::::::::::.::: ::::::::: ..:::::::.::::.:: NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK :::: ::. ::.. ..:. ::.:: ::::: NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK 130 140 150 >>NP_001137232 (OMIM: 600187) eukaryotic translation ini (184 aa) initn: 865 init1: 865 opt: 865 Z-score: 1163.4 bits: 221.6 E(85289): 4.6e-58 Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:31-180) 10 20 30 pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGF :::..:: :::::::.:.:::::::::::: NP_001 MCGTGGTDSKTRRPPHRASFLKRLESKPLKMADDLDFETGDAGASATFPMQCSALRKNGF 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE5 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: NP_001 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE5 LICIQDGYLSLLTETGEVREDLKLPEGELGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK :: ::::::::: ..:::::::.::::.:::::: ::. ::.. ..:. ::.:: ::::: NP_001 LIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 130 140 150 160 170 180 pF1KE5 PCK NP_001 AMAK 153 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:37:29 2016 done: Mon Nov 7 21:37:30 2016 Total Scan time: 4.640 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]