FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5123, 153 aa
  1>>>pF1KE5123 153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3790+/-0.000776; mu= 10.7656+/- 0.047
 mean_var=52.5643+/-10.187, 0's: 0 Z-trim(106.0): 12  B-trim: 0 in 0/51
 Lambda= 0.176900
 statistics sampled from 8703 (8709) to 8703 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.268), width:  16
 Scan time:  1.680

The best scores are:                                      opt bits E(32554)
CCDS3214.1 EIF5A2 gene_id:56648|Hs108|chr3         ( 153) 1027 269.7 4.9e-73
CCDS11099.1 EIF5A gene_id:1984|Hs108|chr17         ( 154)  865 228.4 1.4e-60
CCDS45601.1 EIF5A gene_id:1984|Hs108|chr17         ( 184)  865 228.4 1.6e-60
CCDS53546.1 EIF5AL1 gene_id:143244|Hs108|chr10     ( 154)  840 222.0 1.2e-58


>>CCDS3214.1 EIF5A2 gene_id:56648|Hs108|chr3              (153 aa)
 initn: 1027 init1: 1027 opt: 1027  Z-score: 1424.6  bits: 269.7 E(32554): 4.9e-73
Smith-Waterman score: 1027; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG
               70        80        90       100       110       120

              130       140       150   
pF1KE5 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK
       :::::::::::::::::::::::::::::::::
CCDS32 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK
              130       140       150   

>>CCDS11099.1 EIF5A gene_id:1984|Hs108|chr17              (154 aa)
 initn: 865 init1: 865 opt: 865  Z-score: 1201.1  bits: 228.4 E(32554): 1.4e-60
Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
       :::..:: :::::::.:.::::::::::::::::::::::::::::::::::::::::::
CCDS11 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG
       ::::::::::::::::::::::::::::.::: ::::::::: ..:::::::.::::.::
CCDS11 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
               70        80        90       100       110       120

              130       140       150    
pF1KE5 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK 
       :::: ::. ::.. ..:. ::.:: :::::    
CCDS11 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
              130       140       150    

>>CCDS45601.1 EIF5A gene_id:1984|Hs108|chr17              (184 aa)
 initn: 865 init1: 865 opt: 865  Z-score: 1199.8  bits: 228.4 E(32554): 1.6e-60
Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:31-180)

                                             10        20        30
pF1KE5                               MADEIDFTTGDAGASSTYPMQCSALRKNGF
                                     :::..:: :::::::.:.::::::::::::
CCDS45 MCGTGGTDSKTRRPPHRASFLKRLESKPLKMADDLDFETGDAGASATFPMQCSALRKNGF
               10        20        30        40        50        60

               40        50        60        70        80        90
pF1KE5 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS45 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ
               70        80        90       100       110       120

              100       110       120       130       140       150
pF1KE5 LICIQDGYLSLLTETGEVREDLKLPEGELGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK
       :: ::::::::: ..:::::::.::::.:::::: ::. ::.. ..:. ::.:: :::::
CCDS45 LIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK
              130       140       150       160       170       180

           
pF1KE5 PCK 
           
CCDS45 AMAK
           

>>CCDS53546.1 EIF5AL1 gene_id:143244|Hs108|chr10          (154 aa)
 initn: 840 init1: 840 opt: 840  Z-score: 1166.7  bits: 222.0 E(32554): 1.2e-58
Smith-Waterman score: 840; 82.0% identity (93.3% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
       :::..:: :::::::.:.::::::::::::::::: ::::::::.:::::::::::::::
CCDS53 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG
       ::::::::::::::::::::::::::::.::: ::::::::: ..::: :::.::::.::
CCDS53 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVPEDLRLPEGDLG
               70        80        90       100       110       120

              130       140       150    
pF1KE5 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK 
       :::: ::. ::.. ..:. ::.:: :::::    
CCDS53 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
              130       140       150    




153 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:37:29 2016 done: Mon Nov  7 21:37:29 2016
 Total Scan time:  1.680 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]