Result of FASTA (ccds) for
pFN21AE4570
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4570, 732 aa
1>>>pF1KE4570 732 - 732 aa - 732 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6848+/-0.00088; mu= 16.9894+/- 0.052
mean_var=64.2021+/-12.837, 0's: 0 Z-trim(105.3): 13 B-trim: 0 in 0/50
Lambda= 0.160066
statistics sampled from 8338 (8342) to 8338 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.256), width: 16
Scan time: 2.840
The best scores are: opt bits E(32554)
CCDS13733.1 LSS gene_id:4047|Hs108|chr21 ( 732) 5154 1199.4 0
CCDS54489.1 LSS gene_id:4047|Hs108|chr21 ( 652) 4595 1070.3 0
CCDS46654.1 LSS gene_id:4047|Hs108|chr21 ( 721) 4143 966.0 0
>>CCDS13733.1 LSS gene_id:4047|Hs108|chr21 (732 aa)
initn: 5154 init1: 5154 opt: 5154 Z-score: 6425.0 bits: 1199.4 E(32554): 0
Smith-Waterman score: 5154; 99.9% identity (100.0% similar) in 732 aa overlap (1-732:1-732)
10 20 30 40 50 60
pF1KE4 MTEGTCLRRRGGPYKTEPATDLGRWRLNCERGRQTWTYLQDERAGREQTGLEAYALGLDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTEGTCLRRRGGPYKTEPATDLGRWRLNCERGRQTWTYLQDERAGREQTGLEAYALGLDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 KNYFKDLPKAHTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARIPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KNYFKDLPKAHTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARIPLP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 AGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 HKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 SYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 NLYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NLYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 HVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 SQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 ERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 LKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 QTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLM
:::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS13 QTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYLQSAQSQIHNTCWAMMGLM
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 AVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFS
670 680 690 700 710 720
730
pF1KE4 QLYPERALAGHP
::::::::::::
CCDS13 QLYPERALAGHP
730
>>CCDS54489.1 LSS gene_id:4047|Hs108|chr21 (652 aa)
initn: 4595 init1: 4595 opt: 4595 Z-score: 5728.1 bits: 1070.3 E(32554): 0
Smith-Waterman score: 4595; 99.8% identity (100.0% similar) in 652 aa overlap (81-732:1-652)
60 70 80 90 100 110
pF1KE4 LEAYALGLDTKNYFKDLPKAHTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLI
::::::::::::::::::::::::::::::
CCDS54 MTFYVGLQAEDGHWTGDYGGPLFLLPGLLI
10 20 30
120 130 140 150 160 170
pF1KE4 TCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDD
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE4 PDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLW
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE4 CHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHS
160 170 180 190 200 210
300 310 320 330 340 350
pF1KE4 WLLRVVYALLNLYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WLLRVVYALLNLYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYV
220 230 240 250 260 270
360 370 380 390 400 410
pF1KE4 DGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSC
280 290 300 310 320 330
420 430 440 450 460 470
pF1KE4 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEK
340 350 360 370 380 390
480 490 500 510 520 530
pF1KE4 CPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTY
400 410 420 430 440 450
540 550 560 570 580 590
pF1KE4 VECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTW
460 470 480 490 500 510
600 610 620 630 640 650
pF1KE4 FGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIH
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS54 FGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYLQSAQSQIH
520 530 540 550 560 570
660 670 680 690 700 710
pF1KE4 NTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNI
580 590 600 610 620 630
720 730
pF1KE4 FPIWALGRFSQLYPERALAGHP
::::::::::::::::::::::
CCDS54 FPIWALGRFSQLYPERALAGHP
640 650
>>CCDS46654.1 LSS gene_id:4047|Hs108|chr21 (721 aa)
initn: 4143 init1: 4143 opt: 4143 Z-score: 5163.3 bits: 966.0 E(32554): 0
Smith-Waterman score: 5038; 98.4% identity (98.5% similar) in 732 aa overlap (1-732:1-721)
10 20 30 40 50 60
pF1KE4 MTEGTCLRRRGGPYKTEPATDLGRWRLNCERGRQTWTYLQDERAGREQTGLEAYALGLDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MTEGTCLRRRGGPYKTEPATDLGRWRLNCERGRQTWTYLQDERAGREQTGLEAYALGLDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 KNYFKDLPKAHTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARIPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KNYFKDLPKAHTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARIPLP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 AGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNIL
:::::::::::: :::::::::::::::::::::::::::::::::::::
CCDS46 AGYREEIVRYLR-----------HIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNIL
130 140 150 160
190 200 210 220 230 240
pF1KE4 HKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPM
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 SYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE4 NLYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NLYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQE
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE4 HVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 HVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRL
350 360 370 380 390 400
430 440 450 460 470 480
pF1KE4 SQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPR
410 420 430 440 450 460
490 500 510 520 530 540
pF1KE4 ERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQA
470 480 490 500 510 520
550 560 570 580 590 600
pF1KE4 LKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMG
530 540 550 560 570 580
610 620 630 640 650 660
pF1KE4 QTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLM
:::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS46 QTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYLQSAQSQIHNTCWAMMGLM
590 600 610 620 630 640
670 680 690 700 710 720
pF1KE4 AVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFS
650 660 670 680 690 700
730
pF1KE4 QLYPERALAGHP
::::::::::::
CCDS46 QLYPERALAGHP
710 720
732 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:51:33 2016 done: Sat Nov 5 23:51:34 2016
Total Scan time: 2.840 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]