Result of FASTA (omim) for
pFN21AE6111
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6111, 142 aa
1>>>pF1KE6111 142 - 142 aa - 142 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9315+/-0.000273; mu= 13.7040+/- 0.017
mean_var=57.6160+/-11.393, 0's: 0 Z-trim(118.6): 22 B-trim: 268 in 1/53
Lambda= 0.168967
statistics sampled from 31693 (31722) to 31693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.372), width: 16
Scan time: 3.410
The best scores are: opt bits E(85289)
NP_036414 (OMIM: 300328) potassium voltage-gated c ( 142) 933 234.7 3.8e-62
XP_016872537 (OMIM: 604433,613119) PREDICTED: pota ( 103) 151 44.0 7.1e-05
NP_005463 (OMIM: 604433,613119) potassium voltage- ( 103) 151 44.0 7.1e-05
XP_016872536 (OMIM: 604433,613119) PREDICTED: pota ( 103) 151 44.0 7.1e-05
XP_016872539 (OMIM: 604433,613119) PREDICTED: pota ( 103) 151 44.0 7.1e-05
XP_016872538 (OMIM: 604433,613119) PREDICTED: pota ( 103) 151 44.0 7.1e-05
XP_016872540 (OMIM: 604433,613119) PREDICTED: pota ( 103) 151 44.0 7.1e-05
XP_016872541 (OMIM: 604433,613119) PREDICTED: pota ( 103) 151 44.0 7.1e-05
XP_011543015 (OMIM: 604433,613119) PREDICTED: pota ( 147) 151 44.1 9.6e-05
>>NP_036414 (OMIM: 300328) potassium voltage-gated chann (142 aa)
initn: 933 init1: 933 opt: 933 Z-score: 1236.6 bits: 234.7 E(85289): 3.8e-62
Smith-Waterman score: 933; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE6 MNCSESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKGDDAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MNCSESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKGDDAY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LYILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LYILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQ
70 80 90 100 110 120
130 140
pF1KE6 AEGRRQLASEGLPALAQGAERV
::::::::::::::::::::::
NP_036 AEGRRQLASEGLPALAQGAERV
130 140
>>XP_016872537 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa)
initn: 154 init1: 140 opt: 151 Z-score: 208.5 bits: 44.0 E(85289): 7.1e-05
Smith-Waterman score: 151; 42.9% identity (76.2% similar) in 63 aa overlap (34-94:32-91)
10 20 30 40 50 60
pF1KE6 SESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKG--DDAYL
::. :.: :: . .. .: : :..:.
XP_016 ETTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLG--PDNQTEERRASLPGRDDNSYM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 YILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQA
:::..:...: .:.:::.:::::: :. ...:
XP_016 YILFVMFLFAVTVGSLILGYTRSRK-VDKRSDPYHVYIKNRVSMI
60 70 80 90 100
130 140
pF1KE6 EGRRQLASEGLPALAQGAERV
>>NP_005463 (OMIM: 604433,613119) potassium voltage-gate (103 aa)
initn: 154 init1: 140 opt: 151 Z-score: 208.5 bits: 44.0 E(85289): 7.1e-05
Smith-Waterman score: 151; 42.9% identity (76.2% similar) in 63 aa overlap (34-94:32-91)
10 20 30 40 50 60
pF1KE6 SESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKG--DDAYL
::. :.: :: . .. .: : :..:.
NP_005 ETTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLG--PDNQTEERRASLPGRDDNSYM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 YILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQA
:::..:...: .:.:::.:::::: :. ...:
NP_005 YILFVMFLFAVTVGSLILGYTRSRK-VDKRSDPYHVYIKNRVSMI
60 70 80 90 100
130 140
pF1KE6 EGRRQLASEGLPALAQGAERV
>>XP_016872536 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa)
initn: 154 init1: 140 opt: 151 Z-score: 208.5 bits: 44.0 E(85289): 7.1e-05
Smith-Waterman score: 151; 42.9% identity (76.2% similar) in 63 aa overlap (34-94:32-91)
10 20 30 40 50 60
pF1KE6 SESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKG--DDAYL
::. :.: :: . .. .: : :..:.
XP_016 ETTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLG--PDNQTEERRASLPGRDDNSYM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 YILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQA
:::..:...: .:.:::.:::::: :. ...:
XP_016 YILFVMFLFAVTVGSLILGYTRSRK-VDKRSDPYHVYIKNRVSMI
60 70 80 90 100
130 140
pF1KE6 EGRRQLASEGLPALAQGAERV
>>XP_016872539 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa)
initn: 154 init1: 140 opt: 151 Z-score: 208.5 bits: 44.0 E(85289): 7.1e-05
Smith-Waterman score: 151; 42.9% identity (76.2% similar) in 63 aa overlap (34-94:32-91)
10 20 30 40 50 60
pF1KE6 SESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKG--DDAYL
::. :.: :: . .. .: : :..:.
XP_016 ETTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLG--PDNQTEERRASLPGRDDNSYM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 YILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQA
:::..:...: .:.:::.:::::: :. ...:
XP_016 YILFVMFLFAVTVGSLILGYTRSRK-VDKRSDPYHVYIKNRVSMI
60 70 80 90 100
130 140
pF1KE6 EGRRQLASEGLPALAQGAERV
>>XP_016872538 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa)
initn: 154 init1: 140 opt: 151 Z-score: 208.5 bits: 44.0 E(85289): 7.1e-05
Smith-Waterman score: 151; 42.9% identity (76.2% similar) in 63 aa overlap (34-94:32-91)
10 20 30 40 50 60
pF1KE6 SESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKG--DDAYL
::. :.: :: . .. .: : :..:.
XP_016 ETTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLG--PDNQTEERRASLPGRDDNSYM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 YILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQA
:::..:...: .:.:::.:::::: :. ...:
XP_016 YILFVMFLFAVTVGSLILGYTRSRK-VDKRSDPYHVYIKNRVSMI
60 70 80 90 100
130 140
pF1KE6 EGRRQLASEGLPALAQGAERV
>>XP_016872540 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa)
initn: 154 init1: 140 opt: 151 Z-score: 208.5 bits: 44.0 E(85289): 7.1e-05
Smith-Waterman score: 151; 42.9% identity (76.2% similar) in 63 aa overlap (34-94:32-91)
10 20 30 40 50 60
pF1KE6 SESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKG--DDAYL
::. :.: :: . .. .: : :..:.
XP_016 ETTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLG--PDNQTEERRASLPGRDDNSYM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 YILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQA
:::..:...: .:.:::.:::::: :. ...:
XP_016 YILFVMFLFAVTVGSLILGYTRSRK-VDKRSDPYHVYIKNRVSMI
60 70 80 90 100
130 140
pF1KE6 EGRRQLASEGLPALAQGAERV
>>XP_016872541 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa)
initn: 154 init1: 140 opt: 151 Z-score: 208.5 bits: 44.0 E(85289): 7.1e-05
Smith-Waterman score: 151; 42.9% identity (76.2% similar) in 63 aa overlap (34-94:32-91)
10 20 30 40 50 60
pF1KE6 SESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKG--DDAYL
::. :.: :: . .. .: : :..:.
XP_016 ETTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLG--PDNQTEERRASLPGRDDNSYM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 YILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQA
:::..:...: .:.:::.:::::: :. ...:
XP_016 YILFVMFLFAVTVGSLILGYTRSRK-VDKRSDPYHVYIKNRVSMI
60 70 80 90 100
130 140
pF1KE6 EGRRQLASEGLPALAQGAERV
>>XP_011543015 (OMIM: 604433,613119) PREDICTED: potassiu (147 aa)
initn: 140 init1: 140 opt: 151 Z-score: 206.2 bits: 44.1 E(85289): 9.6e-05
Smith-Waterman score: 151; 42.9% identity (76.2% similar) in 63 aa overlap (34-94:76-135)
10 20 30 40 50 60
pF1KE6 SESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKG--DDAYL
::. :.: :: . .. .: : :..:.
XP_011 ETTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLG--PDNQTEERRASLPGRDDNSYM
50 60 70 80 90 100
70 80 90 100 110 120
pF1KE6 YILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQA
:::..:...: .:.:::.:::::: :. ...:
XP_011 YILFVMFLFAVTVGSLILGYTRSRK-VDKRSDPYHVYIKNRVSMI
110 120 130 140
130 140
pF1KE6 EGRRQLASEGLPALAQGAERV
142 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:32:23 2016 done: Tue Nov 8 09:32:24 2016
Total Scan time: 3.410 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]