FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6422, 501 aa
  1>>>pF1KE6422 501 - 501 aa - 501 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2643+/-0.000834; mu= 13.4627+/- 0.050
 mean_var=77.8734+/-15.492, 0's: 0 Z-trim(108.2): 66  B-trim: 52 in 1/50
 Lambda= 0.145338
 statistics sampled from 9966 (10032) to 9966 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.308), width:  16
 Scan time:  2.720

The best scores are:                                      opt bits E(32554)
CCDS4910.1 TCTE1 gene_id:202500|Hs108|chr6         ( 501) 3315 704.6 6.6e-203
CCDS73817.1 NLRC3 gene_id:197358|Hs108|chr16       (1065)  364 85.9 2.4e-16


>>CCDS4910.1 TCTE1 gene_id:202500|Hs108|chr6              (501 aa)
 initn: 3315 init1: 3315 opt: 3315  Z-score: 3756.3  bits: 704.6 E(32554): 6.6e-203
Smith-Waterman score: 3315; 99.6% identity (99.8% similar) in 501 aa overlap (1-501:1-501)

               10        20        30        40        50        60
pF1KE6 MQDTVTTSALLDPSHSSVSTQDNSSTGGHTSSTSLQLSKPSITPVPAKSRNPRPRANIRR
       :::::::::::::::::::::::::::::::::: :::::::::::::::::.:::::::
CCDS49 MQDTVTTSALLDPSHSSVSTQDNSSTGGHTSSTSPQLSKPSITPVPAKSRNPHPRANIRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 MRRIIAEDPEWSLAIVPLLTELCIQHIIRNFQKNPILKQMLPEHQQKVLNHLSPDLPLAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MRRIIAEDPEWSLAIVPLLTELCIQHIIRNFQKNPILKQMLPEHQQKVLNHLSPDLPLAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TANLIDSENYWLRCCMHRWPVCHVAHHGGSWKRMFFERHLENLLKHFIPGTTDPAVILDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 TANLIDSENYWLRCCMHRWPVCHVAHHGGSWKRMFFERHLENLLKHFIPGTTDPAVILDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LPLCRNYVRRVHVDQFLPPVQLPAQLRPGDQSDSGSEGEMEEPTVDHYQLGDLVAGLSHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 LPLCRNYVRRVHVDQFLPPVQLPAQLRPGDQSDSGSEGEMEEPTVDHYQLGDLVAGLSHL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 EELDLVYDVKDCGMNFEWNLFLFTYRDCLSLAAAIKACHTLKIFKLTRSKVDDDKARIII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 EELDLVYDVKDCGMNFEWNLFLFTYRDCLSLAAAIKACHTLKIFKLTRSKVDDDKARIII
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 RSLLDHPVLEELDLSQNLIGDRGARGAAKLLSHSRLRVLNLANNQVRAPGAQSLAHALAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 RSLLDHPVLEELDLSQNLIGDRGARGAAKLLSHSRLRVLNLANNQVRAPGAQSLAHALAH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 NTNLISLNLRLNCIEDEGGQALAHALQTNKCLTTLHLGGNELSEPTATLLSQVLAINTTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 NTNLISLNLRLNCIEDEGGQALAHALQTNKCLTTLHLGGNELSEPTATLLSQVLAINTTL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE6 TSINLSCNHIGLDGGKQLLEGMSDNKTLLEFDLRLSDVAQESEYLIGQALYANREAARQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 TSINLSCNHIGLDGGKQLLEGMSDNKTLLEFDLRLSDVAQESEYLIGQALYANREAARQR
              430       440       450       460       470       480

              490       500 
pF1KE6 ALNPSHFMSTITANGPENSVG
       :::::::::::::::::::::
CCDS49 ALNPSHFMSTITANGPENSVG
              490       500 

>>CCDS73817.1 NLRC3 gene_id:197358|Hs108|chr16            (1065 aa)
 initn: 661 init1: 285 opt: 364  Z-score: 406.9  bits: 85.9 E(32554): 2.4e-16
Smith-Waterman score: 364; 33.7% identity (68.3% similar) in 205 aa overlap (271-474:770-974)

              250       260       270       280       290       300
pF1KE6 EELDLVYDVKDCGMNFEWNLFLFTYRDCLSLAAAIKACHTLKIFKLTRSKVDDDKARIII
                                     .: :.:  ..:: . .. ... :  :. . 
CCDS73 RSMAEALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSLKELMFSSNSIGDGGAKALA
     740       750       760       770       780       790         

              310       320        330       340       350         
pF1KE6 RSLLDHPVLEELDLSQNLIGDRG-ARGAAKLLSHSRLRVLNLANNQVRAPGAQSLAHALA
       ..:  .  :: :::..: :.: : :   . : ... :  :.: .:..   :::..:::: 
CCDS73 EALKVNQGLESLDLQSNSISDAGVAALMGALCTNQTLLSLSLRENSISPEGAQAIAHALC
     800       810       820       830       840       850         

     360       370       380       390       400       410         
pF1KE6 HNTNLISLNLRLNCIEDEGGQALAHALQTNKCLTTLHLGGNELSEPTATLLSQVLAINTT
        :..: .:.:  : ..:.:..:.: :.. :. ::.:::  : ..  .:  :.:.: .: .
CCDS73 ANSTLKNLDLTANLLHDQGARAIAVAVRENRTLTSLHLQWNFIQAGAAQALGQALQLNRS
     860       870       880       890       900       910         

     420       430       440       450       460       470         
pF1KE6 LTSINLSCNHIGLDGGKQLLEGMSDNKTLLEFDLRLSDVAQESEYLIGQALYANREAARQ
       :::..:. : :: ::.  . .... : .:  . :......  .  ..:.:: .::     
CCDS73 LTSLDLQENAIGDDGACAVARALKVNTALTALYLQVASIGASGAQVLGEALAVNRTLEIL
     920       930       940       950       960       970         

     480       490       500                                       
pF1KE6 RALNPSHFMSTITANGPENSVG                                      
                                                                   
CCDS73 DLRGNAIGVAGAKALANALKVNSSLRRLNLQENSLGMDGAICIATALSGNHRLQHINLQG
     980       990      1000      1010      1020      1030         




501 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:08:20 2016 done: Tue Nov  8 13:08:21 2016
 Total Scan time:  2.720 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]