Result of FASTA (omim) for
pFN21AB5273
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5273, 132 aa
1>>>pF1KB5273 132 - 132 aa - 132 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1410+/-0.000412; mu= 11.2735+/- 0.025
mean_var=55.8810+/-11.042, 0's: 0 Z-trim(110.0): 29 B-trim: 0 in 0/52
Lambda= 0.171570
statistics sampled from 18232 (18260) to 18232 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.599), E-opt: 0.2 (0.214), width: 16
Scan time: 4.630
The best scores are: opt bits E(85289)
NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132) 838 215.6 1.9e-56
NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 587 153.4 9.6e-38
NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 559 146.5 1.2e-35
XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 525 138.1 3.8e-33
NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 512 134.9 3.7e-32
NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135) 499 131.7 3.5e-31
NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166) 488 129.0 2.8e-30
NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144) 432 115.1 3.7e-26
NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128) 407 108.9 2.4e-24
NP_001305970 (OMIM: 602965) fatty acid-binding pro ( 97) 374 100.7 5.4e-22
NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137) 315 86.1 1.8e-17
NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 309 84.6 5.2e-17
NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 309 84.6 5.2e-17
XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 309 84.6 5.2e-17
NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197) 305 83.7 1.4e-16
NP_443192 (OMIM: 608604) retinoid-binding protein ( 134) 301 82.6 2e-16
NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 268 74.5 5.7e-14
NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135) 265 73.7 9.6e-14
NP_001124465 (OMIM: 180260) retinol-binding protei ( 153) 245 68.8 3.3e-12
NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 243 68.3 4.1e-12
NP_001124464 (OMIM: 180260) retinol-binding protei ( 157) 243 68.3 4.8e-12
XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126) 198 57.1 8.9e-09
NP_001316383 (OMIM: 611866) retinol-binding protei ( 86) 150 45.2 2.4e-05
NP_001434 (OMIM: 134650) fatty acid-binding protei ( 127) 133 41.1 0.00063
>>NP_002668 (OMIM: 170715) myelin P2 protein [Homo sapie (132 aa)
initn: 838 init1: 838 opt: 838 Z-score: 1134.4 bits: 215.6 E(85289): 1.9e-56
Smith-Waterman score: 838; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
70 80 90 100 110 120
130
pF1KB5 KGVVCTRIYEKV
::::::::::::
NP_002 KGVVCTRIYEKV
130
>>NP_001433 (OMIM: 600434) fatty acid-binding protein, a (132 aa)
initn: 585 init1: 571 opt: 587 Z-score: 798.6 bits: 153.4 E(85289): 9.6e-38
Smith-Waterman score: 587; 67.2% identity (88.5% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
: . :.:::::::::::::::: .:::.::::....:::..::: .::.:::..::::::
NP_001 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
::::: :::::.:.:::.::.:: .::. : : .::.:::: :::::: . :.:.:: :
NP_001 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
70 80 90 100 110 120
130
pF1KB5 KGVVCTRIYEKV
:::. ::.::.
NP_001 KGVTSTRVYERA
130
>>NP_004093 (OMIM: 134651) fatty acid-binding protein, h (133 aa)
initn: 559 init1: 559 opt: 559 Z-score: 761.1 bits: 146.5 E(85289): 1.2e-35
Smith-Waterman score: 559; 63.4% identity (88.5% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
: . ::::::::.:.:::::::.::::.:::......:::.:: :.:::.:..:.:::::
NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
:::::::: ::.:::::.::.::::::. :.: ..:.:::.:::. :.:..::..
NP_004 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
70 80 90 100 110 120
130
pF1KB5 KGVVCTRIYEKV
.:::: :::
NP_004 GTAVCTRTYEKEA
130
>>XP_011539309 (OMIM: 134651) PREDICTED: fatty acid-bind (126 aa)
initn: 515 init1: 515 opt: 525 Z-score: 716.0 bits: 138.1 E(85289): 3.8e-33
Smith-Waterman score: 525; 63.6% identity (91.7% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
: . ::::::::.:.:::::::.::::.:::......:::.:: :.:::.:..:.:::::
XP_011 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
:::::::: ::.:::::.::.::::::. :.: ..:.:::.:::. :.:..::.. :.
XP_011 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILMEKL
70 80 90 100 110 120
130
pF1KB5 KGVVCTRIYEKV
.
XP_011 QLRNVK
>>NP_001437 (OMIM: 602965) fatty acid-binding protein, b (132 aa)
initn: 512 init1: 512 opt: 512 Z-score: 698.3 bits: 134.9 E(85289): 3.7e-32
Smith-Waterman score: 512; 59.5% identity (85.5% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
: . : .::::..:.:::.::::::::.:::..::..:::::::..:: ..::: :::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
:::::.::.::.:::::.:. ::.:.:. .: ..:.::::::.. :.. .:::: .
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
70 80 90 100 110 120
130
pF1KB5 KGVVCTRIYEKV
:: .: :::
NP_001 GDVVAVRHYEKA
130
>>NP_001435 (OMIM: 605168) fatty acid-binding protein, e (135 aa)
initn: 499 init1: 499 opt: 499 Z-score: 680.7 bits: 131.7 E(85289): 3.5e-31
Smith-Waterman score: 499; 58.7% identity (84.1% similar) in 126 aa overlap (7-132:9-134)
10 20 30 40 50
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTF
: :.::.:..::.::: ::::.: ::.: .::: ::. : .::.::::.
NP_001 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 KNTEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAEC
:.:..: ::..:::::::.:::... .. :.: : :.:::::.:: ::: .::.:.::
NP_001 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
70 80 90 100 110 120
120 130
pF1KB5 KMKGVVCTRIYEKV
:..:.::::::::
NP_001 VMNNVTCTRIYEKVE
130
>>NP_001305968 (OMIM: 602965) fatty acid-binding protein (166 aa)
initn: 488 init1: 488 opt: 488 Z-score: 664.6 bits: 129.0 E(85289): 2.8e-30
Smith-Waterman score: 488; 62.6% identity (90.4% similar) in 115 aa overlap (1-115:1-115)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
: . : .::::..:.:::.::::::::.:::..::..:::::::..:: ..::: :::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
:::::.::.::.:::::.:. ::.:.:. .: ..:.::::::.. :.. .::::
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVSND
70 80 90 100 110 120
130
pF1KB5 KGVVCTRIYEKV
NP_001 NSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM
130 140 150 160
>>NP_001307925 (OMIM: 134651) fatty acid-binding protein (144 aa)
initn: 432 init1: 432 opt: 432 Z-score: 590.7 bits: 115.1 E(85289): 3.7e-26
Smith-Waterman score: 527; 58.5% identity (81.7% similar) in 142 aa overlap (1-131:1-142)
10 20 30 40
pF1KB5 MSNKFLGTWKLVSSENFDDYMKAL-----------GVGLATRKLGNLAKPTVIISKKGDI
: . ::::::::.:.:::::::.: :::.:::......:::.:: :.:::
NP_001 MVDAFLGTWKLVDSKNFDDYMKSLAHILITFPLPSGVGFATRQVASMTKPTTIIEKNGDI
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB5 ITIRTESTFKNTEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKL
.:..:.::::::::::::: ::.:::::.::.::::::. :.: ..:.:::.:::. :.:
NP_001 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVREL
70 80 90 100 110 120
110 120 130
pF1KB5 VNGKMVAECKMKGVVCTRIYEKV
..::.. .:::: :::
NP_001 IDGKLILTLTHGTAVCTRTYEKEA
130 140
>>NP_001305971 (OMIM: 602965) fatty acid-binding protein (128 aa)
initn: 407 init1: 407 opt: 407 Z-score: 558.0 bits: 108.9 E(85289): 2.4e-24
Smith-Waterman score: 407; 58.9% identity (85.0% similar) in 107 aa overlap (25-131:21-127)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
:::.:::..::..:::::::..:: ..::: :::::
NP_001 MQLKEKDWRSALIKTANQQKGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
:::::.::.::.:::::.:. ::.:.:. .: ..:.::::::.. :.. .:::: .
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
60 70 80 90 100 110
130
pF1KB5 KGVVCTRIYEKV
:: .: :::
NP_001 GDVVAVRHYEKA
120
>>NP_001305970 (OMIM: 602965) fatty acid-binding protein (97 aa)
initn: 382 init1: 364 opt: 374 Z-score: 515.8 bits: 100.7 E(85289): 5.4e-22
Smith-Waterman score: 374; 68.3% identity (92.7% similar) in 82 aa overlap (1-82:1-82)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
: . : .::::..:.:::.::::::::.:::..::..:::::::..:: ..::: :::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
:::::.::.::.:::::.:. :
NP_001 TEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE
70 80 90
132 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:23:01 2016 done: Sat Nov 5 12:23:02 2016
Total Scan time: 4.630 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]