FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6240, 195 aa 1>>>pF1KE6240 195 - 195 aa - 195 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2196+/-0.000246; mu= 14.3382+/- 0.016 mean_var=66.0454+/-13.059, 0's: 0 Z-trim(121.8): 26 B-trim: 0 in 0/56 Lambda= 0.157817 statistics sampled from 38890 (38917) to 38890 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.456), width: 16 Scan time: 4.270 The best scores are: opt bits E(85289) NP_006658 (OMIM: 300435) membrane-associated proge ( 195) 1314 306.8 1.4e-83 NP_001269550 (OMIM: 300435) membrane-associated pr ( 143) 744 177.0 1.3e-44 NP_006311 (OMIM: 607735) membrane-associated proge ( 247) 664 158.9 6.1e-39 XP_011529835 (OMIM: 607735) PREDICTED: membrane-as ( 217) 262 67.3 1.9e-11 NP_037481 (OMIM: 611874) neudesin precursor [Homo ( 172) 233 60.7 1.6e-09 >>NP_006658 (OMIM: 300435) membrane-associated progester (195 aa) initn: 1314 init1: 1314 opt: 1314 Z-score: 1621.5 bits: 306.8 E(85289): 1.4e-83 Smith-Waterman score: 1314; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195) 10 20 30 40 50 60 pF1KE6 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKIVRGDQPAASGDSDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKIVRGDQPAASGDSDDD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EPPPLPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 EPPPLPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 ASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 ASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVY 130 140 150 160 170 180 190 pF1KE6 SDEEEPKDESARKND ::::::::::::::: NP_006 SDEEEPKDESARKND 190 >>NP_001269550 (OMIM: 300435) membrane-associated proges (143 aa) initn: 944 init1: 736 opt: 744 Z-score: 922.1 bits: 177.0 E(85289): 1.3e-44 Smith-Waterman score: 843; 72.8% identity (72.8% similar) in 195 aa overlap (1-195:1-143) 10 20 30 40 50 60 pF1KE6 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKIVRGDQPAASGDSDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKIVRGDQPAASGDSDDD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EPPPLPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRD ::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EPPPLPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGP----------- 70 80 90 100 130 140 150 160 170 180 pF1KE6 ASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVY :::::::::::::::::: NP_001 -----------------------------------------VKYHHVGKLLKEGEEPTVY 110 120 190 pF1KE6 SDEEEPKDESARKND ::::::::::::::: NP_001 SDEEEPKDESARKND 130 140 >>NP_006311 (OMIM: 607735) membrane-associated progester (247 aa) initn: 636 init1: 636 opt: 664 Z-score: 820.1 bits: 158.9 E(85289): 6.1e-39 Smith-Waterman score: 664; 59.4% identity (82.4% similar) in 165 aa overlap (30-190:80-244) 10 20 30 40 50 pF1KE6 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKI-VR-GDQPAASGDS ::. :..: .. :.. :: : . ..: . NP_006 ESPGDAGAAAEGGGWAAAALALLTGGGEMLLNVALVALVLLGAYRLWVRWGRRGLGAGAG 50 60 70 80 90 100 60 70 80 90 100 110 pF1KE6 DDDEPPP--LPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGV .: : :::.:.:::. .::..:: ..::::.:.:::::::::: ::::: ::::. NP_006 AGEESPATSLPRMKKRDFSLEQLRQYDGSRNPRILLAVNGKVFDVTKGSKFYGPAGPYGI 110 120 130 140 150 160 120 130 140 150 160 170 pF1KE6 FAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGE :::::::::::::::::.::.:::::::::.:.:.:.. .:: :: :: .::.::: :: NP_006 FAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLLKPGE 170 180 190 200 210 220 180 190 pF1KE6 EPTVYSDEEEPKDESARKND ::. :.:::. ::.. NP_006 EPSEYTDEEDTKDHNKQD 230 240 >>XP_011529835 (OMIM: 607735) PREDICTED: membrane-associ (217 aa) initn: 246 init1: 246 opt: 262 Z-score: 326.3 bits: 67.3 E(85289): 1.9e-11 Smith-Waterman score: 262; 50.0% identity (76.2% similar) in 84 aa overlap (30-109:80-163) 10 20 30 40 50 pF1KE6 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKI-VR-GDQPAASGDS ::. :..: .. :.. :: : . ..: . XP_011 ESPGDAGAAAEGGGWAAAALALLTGGGEMLLNVALVALVLLGAYRLWVRWGRRGLGAGAG 50 60 70 80 90 100 60 70 80 90 100 110 pF1KE6 DDDEPPP--LPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGV .: : :::.:.:::. .::..:: ..::::.:.:::::::::: ::::: XP_011 AGEESPATSLPRMKKRDFSLEQLRQYDGSRNPRILLAVNGKVFDVTKGSKFYGPGEELEG 110 120 130 140 150 160 120 130 140 150 160 170 pF1KE6 FAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGE XP_011 EGKDPLQLKHNPLRTGRPLGTGPRLGACKVPTLQSLKSRRISNTSDSL 170 180 190 200 210 >>NP_037481 (OMIM: 611874) neudesin precursor [Homo sapi (172 aa) initn: 163 init1: 138 opt: 233 Z-score: 292.1 bits: 60.7 E(85289): 1.6e-09 Smith-Waterman score: 233; 33.3% identity (60.5% similar) in 162 aa overlap (41-189:18-171) 20 30 40 50 60 pF1KE6 ADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKIVRGDQPAASGDSDD--DEPPPLPRL :. .. : : .:.. .. ::. NP_037 MVGPAPRRRLRPLAALALVLALAPGLPTARAGQTPRPAERGPPV--- 10 20 30 40 70 80 90 100 110 120 pF1KE6 KRRDFTPAELRRFDGVQ-DPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLAT : :: :: :. : . : : .:..: :::::.:..::: .::....:.:..::.: NP_037 --RLFTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAK 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 FCLDKEALKDEYDDLSDLTAAQQETLSDWESQ-FTFKYHHVG----KLLKEGEEPTV-YS . :: : : . ::: . :.:.. .. . :: :: ..:.: :.. .. NP_037 MSLDPA---DLTHDTTGLTAKELEALDEVFTKVYKAKYPIVGYTARRILNEDGSPNLDFK 110 120 130 140 150 190 pF1KE6 DEEEP----KDESARKND :..: ::: NP_037 PEDQPHFDIKDEF 160 170 195 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:22:19 2016 done: Tue Nov 8 11:22:20 2016 Total Scan time: 4.270 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]