FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6240, 195 aa 1>>>pF1KE6240 195 - 195 aa - 195 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1520+/-0.000508; mu= 14.8814+/- 0.031 mean_var=66.0057+/-13.182, 0's: 0 Z-trim(114.7): 8 B-trim: 9 in 1/51 Lambda= 0.157864 statistics sampled from 15233 (15239) to 15233 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.468), width: 16 Scan time: 1.540 The best scores are: opt bits E(32554) CCDS14576.1 PGRMC1 gene_id:10857|Hs108|chrX ( 195) 1314 306.8 5.3e-84 CCDS65313.1 PGRMC1 gene_id:10857|Hs108|chrX ( 143) 744 176.9 5e-45 CCDS3739.2 PGRMC2 gene_id:10424|Hs108|chr4 ( 247) 664 158.9 2.4e-39 CCDS11044.1 CYB5D2 gene_id:124936|Hs108|chr17 ( 264) 252 65.0 4.4e-11 >>CCDS14576.1 PGRMC1 gene_id:10857|Hs108|chrX (195 aa) initn: 1314 init1: 1314 opt: 1314 Z-score: 1621.5 bits: 306.8 E(32554): 5.3e-84 Smith-Waterman score: 1314; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195) 10 20 30 40 50 60 pF1KE6 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKIVRGDQPAASGDSDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKIVRGDQPAASGDSDDD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EPPPLPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 EPPPLPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 ASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 ASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVY 130 140 150 160 170 180 190 pF1KE6 SDEEEPKDESARKND ::::::::::::::: CCDS14 SDEEEPKDESARKND 190 >>CCDS65313.1 PGRMC1 gene_id:10857|Hs108|chrX (143 aa) initn: 944 init1: 736 opt: 744 Z-score: 921.9 bits: 176.9 E(32554): 5e-45 Smith-Waterman score: 843; 72.8% identity (72.8% similar) in 195 aa overlap (1-195:1-143) 10 20 30 40 50 60 pF1KE6 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKIVRGDQPAASGDSDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKIVRGDQPAASGDSDDD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EPPPLPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRD ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 EPPPLPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGP----------- 70 80 90 100 130 140 150 160 170 180 pF1KE6 ASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVY :::::::::::::::::: CCDS65 -----------------------------------------VKYHHVGKLLKEGEEPTVY 110 120 190 pF1KE6 SDEEEPKDESARKND ::::::::::::::: CCDS65 SDEEEPKDESARKND 130 140 >>CCDS3739.2 PGRMC2 gene_id:10424|Hs108|chr4 (247 aa) initn: 636 init1: 636 opt: 664 Z-score: 820.0 bits: 158.9 E(32554): 2.4e-39 Smith-Waterman score: 664; 59.4% identity (82.4% similar) in 165 aa overlap (30-190:80-244) 10 20 30 40 50 pF1KE6 MAAEDVVATGADPSDLESGGLLHEIFTSPLNLLLLGLCIFLLYKI-VR-GDQPAASGDS ::. :..: .. :.. :: : . ..: . CCDS37 ESPGDAGAAAEGGGWAAAALALLTGGGEMLLNVALVALVLLGAYRLWVRWGRRGLGAGAG 50 60 70 80 90 100 60 70 80 90 100 110 pF1KE6 DDDEPPP--LPRLKRRDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGV .: : :::.:.:::. .::..:: ..::::.:.:::::::::: ::::: ::::. CCDS37 AGEESPATSLPRMKKRDFSLEQLRQYDGSRNPRILLAVNGKVFDVTKGSKFYGPAGPYGI 110 120 130 140 150 160 120 130 140 150 160 170 pF1KE6 FAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGE :::::::::::::::::.::.:::::::::.:.:.:.. .:: :: :: .::.::: :: CCDS37 FAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLLKPGE 170 180 190 200 210 220 180 190 pF1KE6 EPTVYSDEEEPKDESARKND ::. :.:::. ::.. CCDS37 EPSEYTDEEDTKDHNKQD 230 240 >>CCDS11044.1 CYB5D2 gene_id:124936|Hs108|chr17 (264 aa) initn: 298 init1: 166 opt: 252 Z-score: 312.4 bits: 65.0 E(32554): 4.4e-11 Smith-Waterman score: 252; 42.5% identity (67.0% similar) in 106 aa overlap (66-170:31-133) 40 50 60 70 80 90 pF1KE6 GLCIFLLYKIVRGDQPAASGDSDDDEPPPLPRLKRRDFTPAELRRF-DGVQDPRILMAIN :: : : : :: :. : :: . .:. CCDS11 MLRCGGRGLLLGLAVAAAAVMAARLMGWWGPRAGFRLFIPEELSRYRGGPGDPGLYLALL 10 20 30 40 50 60 100 110 120 130 140 150 pF1KE6 GKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLS :.:.::..::. : : . :. ::::::::...: .. .: ::.:::.::.. :: CCDS11 GRVYDVSSGRRHYEPGSHYSGFAGRDASRAFVTGDCSEAGL---VDDVSDLSAAEMLTLH 70 80 90 100 110 160 170 180 190 pF1KE6 DWESQFTFKYHHVGKLLKEGEEPTVYSDEEEPKDESARKND .: : . .: ::.. CCDS11 NWLSFYEKNYVCVGRVTGRFYGEDGLPTPALTQVEAAITRGLEANKLQLQEKQTFPPCNA 120 130 140 150 160 170 195 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:22:19 2016 done: Tue Nov 8 11:22:19 2016 Total Scan time: 1.540 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]