FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1569, 87 aa 1>>>pF1KE1569 87 - 87 aa - 87 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5438+/-0.000304; mu= 11.8079+/- 0.019 mean_var=48.0645+/- 9.591, 0's: 0 Z-trim(115.7): 7 B-trim: 231 in 1/53 Lambda= 0.184996 statistics sampled from 26311 (26318) to 26311 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.309), width: 16 Scan time: 4.340 The best scores are: opt bits E(85289) NP_004097 (OMIM: 147139) high affinity immunoglobu ( 86) 529 148.0 1.8e-36 NP_000725 (OMIM: 186780,610163) T-cell surface gly ( 163) 166 51.3 4.4e-07 NP_932170 (OMIM: 186780,610163) T-cell surface gly ( 164) 166 51.3 4.4e-07 XP_011508447 (OMIM: 186780,610163) PREDICTED: T-ce ( 171) 158 49.2 2e-06 XP_011508446 (OMIM: 186780,610163) PREDICTED: T-ce ( 172) 158 49.2 2e-06 XP_016858290 (OMIM: 186780,610163) PREDICTED: T-ce ( 194) 156 48.7 3.2e-06 XP_016858289 (OMIM: 186780,610163) PREDICTED: T-ce ( 195) 156 48.7 3.2e-06 >>NP_004097 (OMIM: 147139) high affinity immunoglobulin (86 aa) initn: 323 init1: 297 opt: 529 Z-score: 776.0 bits: 148.0 E(85289): 1.8e-36 Smith-Waterman score: 529; 98.9% identity (98.9% similar) in 87 aa overlap (1-87:1-86) 10 20 30 40 50 60 pF1KE1 MIPAVVLLLLLLVEQAAALGEPQLCYILDAILFLYGIVLTLLYCRLKVIQVRKAAITSYE ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: NP_004 MIPAVVLLLLLLVEQAAALGEPQLCYILDAILFLYGIVLTLLYCRLK-IQVRKAAITSYE 10 20 30 40 50 70 80 pF1KE1 KSDGVYTGLSTRNQETYETLKHEKPPQ ::::::::::::::::::::::::::: NP_004 KSDGVYTGLSTRNQETYETLKHEKPPQ 60 70 80 >>NP_000725 (OMIM: 186780,610163) T-cell surface glycopr (163 aa) initn: 170 init1: 114 opt: 166 Z-score: 248.2 bits: 51.3 E(85289): 4.4e-07 Smith-Waterman score: 166; 33.3% identity (71.3% similar) in 87 aa overlap (1-84:6-90) 10 20 30 40 50 pF1KE1 MIPAVVLLLLLLVEQAAALG--EPQLCYILDAILFLYGIVLTLLYCRLKVIQVRK .. :..: : . .: ..: .:.:::.::.:::.::..:: :. :.: :. NP_000 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKF--SRS 10 20 30 40 50 60 70 80 pF1KE1 AAITSYEKSDG-VYTGLSTRNQETYETLKHEKPPQ : .:..... .:. :. .: :..: ... NP_000 ADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKDKM 60 70 80 90 100 110 NP_000 AEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 120 130 140 150 160 >>NP_932170 (OMIM: 186780,610163) T-cell surface glycopr (164 aa) initn: 170 init1: 114 opt: 166 Z-score: 248.2 bits: 51.3 E(85289): 4.4e-07 Smith-Waterman score: 166; 33.3% identity (71.3% similar) in 87 aa overlap (1-84:6-90) 10 20 30 40 50 pF1KE1 MIPAVVLLLLLLVEQAAALG--EPQLCYILDAILFLYGIVLTLLYCRLKVIQVRK .. :..: : . .: ..: .:.:::.::.:::.::..:: :. :.: :. NP_932 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKF--SRS 10 20 30 40 50 60 70 80 pF1KE1 AAITSYEKSDG-VYTGLSTRNQETYETLKHEKPPQ : .:..... .:. :. .: :..: ... NP_932 ADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDK 60 70 80 90 100 110 NP_932 MAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 120 130 140 150 160 >>XP_011508447 (OMIM: 186780,610163) PREDICTED: T-cell s (171 aa) initn: 170 init1: 114 opt: 158 Z-score: 236.3 bits: 49.2 E(85289): 2e-06 Smith-Waterman score: 158; 36.5% identity (74.3% similar) in 74 aa overlap (14-84:27-98) 10 20 30 40 pF1KE1 MIPAVVLLLLLLVEQAAALG--EPQLCYILDAILFLYGIVLTLLYCR :.: ..: .:.:::.::.:::.::..:: :. : XP_011 MVRSWEKGLHSLVRTPLTTSEDQQVFEEAQSFGLLDPKLCYLLDGILFIYGVILTALFLR 10 20 30 40 50 60 50 60 70 80 pF1KE1 LKVIQVRKAAITSYEKSDG-VYTGLSTRNQETYETLKHEKPPQ .: :.: .:..... .:. :. .: :..: ... XP_011 VKF--SRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLY 70 80 90 100 110 XP_011 NELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 120 130 140 150 160 170 >>XP_011508446 (OMIM: 186780,610163) PREDICTED: T-cell s (172 aa) initn: 170 init1: 114 opt: 158 Z-score: 236.3 bits: 49.2 E(85289): 2e-06 Smith-Waterman score: 158; 36.5% identity (74.3% similar) in 74 aa overlap (14-84:27-98) 10 20 30 40 pF1KE1 MIPAVVLLLLLLVEQAAALG--EPQLCYILDAILFLYGIVLTLLYCR :.: ..: .:.:::.::.:::.::..:: :. : XP_011 MVRSWEKGLHSLVRTPLTTSEDQQVFEEAQSFGLLDPKLCYLLDGILFIYGVILTALFLR 10 20 30 40 50 60 50 60 70 80 pF1KE1 LKVIQVRKAAITSYEKSDG-VYTGLSTRNQETYETLKHEKPPQ .: :.: .:..... .:. :. .: :..: ... XP_011 VKF--SRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGL 70 80 90 100 110 XP_011 YNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 120 130 140 150 160 170 >>XP_016858290 (OMIM: 186780,610163) PREDICTED: T-cell s (194 aa) initn: 170 init1: 114 opt: 156 Z-score: 232.6 bits: 48.7 E(85289): 3.2e-06 Smith-Waterman score: 156; 36.6% identity (74.6% similar) in 71 aa overlap (15-84:53-121) 10 20 30 40 pF1KE1 MIPAVVLLLLLLVEQAAALGEPQLCYILDAILFLYGIVLTLLYC :. .: .:.:::.::.:::.::..:: :. XP_016 LPHPTQQSPEKKVLGPGGCTCRHNRFCNEAQSFGLLDPKLCYLLDGILFIYGVILTALFL 30 40 50 60 70 80 50 60 70 80 pF1KE1 RLKVIQVRKAAITSYEKSDG-VYTGLSTRNQETYETLKHEKPPQ :.: :.: .:..... .:. :. .: :..: ... XP_016 RVKF--SRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGL 90 100 110 120 130 140 XP_016 YNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 150 160 170 180 190 >>XP_016858289 (OMIM: 186780,610163) PREDICTED: T-cell s (195 aa) initn: 170 init1: 114 opt: 156 Z-score: 232.6 bits: 48.7 E(85289): 3.2e-06 Smith-Waterman score: 156; 36.6% identity (74.6% similar) in 71 aa overlap (15-84:53-121) 10 20 30 40 pF1KE1 MIPAVVLLLLLLVEQAAALGEPQLCYILDAILFLYGIVLTLLYC :. .: .:.:::.::.:::.::..:: :. XP_016 LPHPTQQSPEKKVLGPGGCTCRHNRFCNEAQSFGLLDPKLCYLLDGILFIYGVILTALFL 30 40 50 60 70 80 50 60 70 80 pF1KE1 RLKVIQVRKAAITSYEKSDG-VYTGLSTRNQETYETLKHEKPPQ :.: :.: .:..... .:. :. .: :..: ... XP_016 RVKF--SRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEG 90 100 110 120 130 140 XP_016 LYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 150 160 170 180 190 87 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:58:30 2016 done: Sun Nov 6 23:58:31 2016 Total Scan time: 4.340 Total Display time: -0.050 Function used was FASTA [36.3.4 Apr, 2011]