Result of FASTA (omim) for
pFN21AE5223
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5223, 249 aa
1>>>pF1KE5223 249 - 249 aa - 249 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0131+/-0.00039; mu= 12.9253+/- 0.024
mean_var=166.8248+/-35.404, 0's: 0 Z-trim(118.0): 195 B-trim: 1285 in 1/56
Lambda= 0.099299
statistics sampled from 30130 (30456) to 30130 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.357), width: 16
Scan time: 5.890
The best scores are: opt bits E(85289)
XP_011514491 (OMIM: 612550) PREDICTED: tripartite ( 249) 1716 257.5 1.7e-68
NP_944606 (OMIM: 612549) tripartite motif-containi ( 250) 1714 257.2 2e-68
NP_001304744 (OMIM: 612550) tripartite motif-conta ( 250) 1704 255.7 5.5e-68
NP_942150 (OMIM: 612550) tripartite motif-containi ( 250) 1704 255.7 5.5e-68
XP_011514489 (OMIM: 612550) PREDICTED: tripartite ( 250) 1704 255.7 5.5e-68
XP_011514091 (OMIM: 612548) PREDICTED: E3 ubiquiti ( 486) 1578 238.1 2.2e-62
NP_001268379 (OMIM: 612548) E3 ubiquitin-protein l ( 486) 1578 238.1 2.2e-62
XP_011514089 (OMIM: 612548) PREDICTED: E3 ubiquiti ( 304) 1566 236.1 5.5e-62
NP_835226 (OMIM: 612548) E3 ubiquitin-protein liga ( 487) 1566 236.4 7.3e-62
NP_001268380 (OMIM: 612548) E3 ubiquitin-protein l ( 487) 1566 236.4 7.3e-62
XP_011514492 (OMIM: 612550) PREDICTED: tripartite ( 228) 1310 199.3 5.1e-51
NP_001008275 (OMIM: 613288) tripartite motif-conta ( 477) 372 65.3 2.2e-10
NP_006501 (OMIM: 602165) zinc finger protein RFP [ ( 513) 354 62.8 1.4e-09
XP_016873952 (OMIM: 608487) PREDICTED: tripartite ( 265) 342 60.7 3.1e-09
XP_006718421 (OMIM: 608487) PREDICTED: tripartite ( 265) 342 60.7 3.1e-09
XP_011518729 (OMIM: 608487) PREDICTED: tripartite ( 271) 342 60.7 3.1e-09
XP_016873951 (OMIM: 608487) PREDICTED: tripartite ( 300) 342 60.7 3.3e-09
XP_016873950 (OMIM: 608487) PREDICTED: tripartite ( 310) 342 60.8 3.4e-09
XP_011518728 (OMIM: 608487) PREDICTED: tripartite ( 310) 342 60.8 3.4e-09
XP_016873949 (OMIM: 608487) PREDICTED: tripartite ( 314) 342 60.8 3.4e-09
XP_005253241 (OMIM: 608487) PREDICTED: tripartite ( 326) 342 60.8 3.5e-09
NP_149084 (OMIM: 608487) tripartite motif-containi ( 326) 342 60.8 3.5e-09
NP_149083 (OMIM: 608487) tripartite motif-containi ( 347) 342 60.8 3.6e-09
XP_005253240 (OMIM: 608487) PREDICTED: tripartite ( 493) 342 61.0 4.5e-09
NP_149023 (OMIM: 608487) tripartite motif-containi ( 493) 342 61.0 4.5e-09
NP_742013 (OMIM: 605700) E3 ubiquitin-protein liga ( 488) 340 60.7 5.4e-09
NP_067076 (OMIM: 605700) E3 ubiquitin-protein liga ( 518) 340 60.8 5.6e-09
NP_741983 (OMIM: 617007) tripartite motif-containi ( 493) 323 58.3 2.9e-08
XP_005273509 (OMIM: 617007) PREDICTED: tripartite ( 298) 315 56.9 4.8e-08
NP_660215 (OMIM: 607868) E3 ubiquitin-protein liga ( 468) 314 57.0 7e-08
XP_016857901 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 467) 306 55.8 1.5e-07
NP_003132 (OMIM: 109092) E3 ubiquitin-protein liga ( 475) 303 55.4 2.1e-07
NP_001291424 (OMIM: 617007) tripartite motif-conta ( 266) 298 54.4 2.4e-07
XP_011542587 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 391) 293 53.9 5e-07
XP_016857118 (OMIM: 616755) PREDICTED: E3 ubiquiti ( 555) 285 52.9 1.4e-06
NP_060677 (OMIM: 616755) E3 ubiquitin-protein liga ( 475) 275 51.4 3.4e-06
XP_011512568 (OMIM: 609316) PREDICTED: E3 ubiquiti ( 261) 260 48.9 1e-05
XP_011512567 (OMIM: 609316) PREDICTED: E3 ubiquiti ( 421) 260 49.2 1.4e-05
XP_011512566 (OMIM: 609316) PREDICTED: E3 ubiquiti ( 424) 260 49.2 1.4e-05
NP_008959 (OMIM: 609316) E3 ubiquitin-protein liga ( 425) 260 49.2 1.4e-05
XP_011514090 (OMIM: 612548) PREDICTED: E3 ubiquiti ( 278) 244 46.7 5.3e-05
NP_065091 (OMIM: 606124) tripartite motif-containi ( 452) 245 47.1 6.5e-05
NP_892030 (OMIM: 616017) E3 ubiquitin-protein liga ( 500) 245 47.1 6.9e-05
NP_569074 (OMIM: 605684) tripartite motif-containi ( 270) 239 45.9 8.6e-05
XP_016857120 (OMIM: 616755) PREDICTED: E3 ubiquiti ( 291) 239 46.0 9e-05
NP_067629 (OMIM: 605684) tripartite motif-containi ( 488) 239 46.3 0.00012
NP_001003827 (OMIM: 605684) tripartite motif-conta ( 488) 239 46.3 0.00012
NP_006065 (OMIM: 606559) E3 ubiquitin-protein liga ( 498) 238 46.1 0.00014
XP_016873516 (OMIM: 606124) PREDICTED: tripartite ( 375) 232 45.1 0.00021
NP_477514 (OMIM: 607564) tripartite motif-containi ( 488) 228 44.7 0.00037
>>XP_011514491 (OMIM: 612550) PREDICTED: tripartite moti (249 aa)
initn: 1716 init1: 1716 opt: 1716 Z-score: 1350.9 bits: 257.5 E(85289): 1.7e-68
Smith-Waterman score: 1716; 98.8% identity (99.6% similar) in 249 aa overlap (1-249:1-249)
10 20 30 40 50 60
pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAWQVSLLELEDWLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::.::::::::::::::::::::::::::::::.:::::::::::::::::::::
XP_011 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
190 200 210 220 230 240
pF1KE5 IWFHSMASR
:::::::::
XP_011 IWFHSMASR
>>NP_944606 (OMIM: 612549) tripartite motif-containing p (250 aa)
initn: 1712 init1: 1679 opt: 1714 Z-score: 1349.3 bits: 257.2 E(85289): 2e-68
Smith-Waterman score: 1714; 98.8% identity (99.6% similar) in 250 aa overlap (1-249:1-250)
10 20 30 40 50 60
pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_944 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_944 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::.::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_944 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_944 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
190 200 210 220 230 240
pF1KE5 IW-FHSMASR
:: :::::::
NP_944 IWKFHSMASR
250
>>NP_001304744 (OMIM: 612550) tripartite motif-containin (250 aa)
initn: 1702 init1: 1669 opt: 1704 Z-score: 1341.6 bits: 255.7 E(85289): 5.5e-68
Smith-Waterman score: 1704; 98.4% identity (99.2% similar) in 250 aa overlap (1-249:1-250)
10 20 30 40 50 60
pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAWQVSLLELEDWLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::.::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_001 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
190 200 210 220 230 240
pF1KE5 IW-FHSMASR
:: :::::::
NP_001 IWKFHSMASR
250
>>NP_942150 (OMIM: 612550) tripartite motif-containing p (250 aa)
initn: 1702 init1: 1669 opt: 1704 Z-score: 1341.6 bits: 255.7 E(85289): 5.5e-68
Smith-Waterman score: 1704; 98.4% identity (99.2% similar) in 250 aa overlap (1-249:1-250)
10 20 30 40 50 60
pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_942 MAWQVSLLELEDWLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::.::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_942 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_942 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
190 200 210 220 230 240
pF1KE5 IW-FHSMASR
:: :::::::
NP_942 IWKFHSMASR
250
>>XP_011514489 (OMIM: 612550) PREDICTED: tripartite moti (250 aa)
initn: 1702 init1: 1669 opt: 1704 Z-score: 1341.6 bits: 255.7 E(85289): 5.5e-68
Smith-Waterman score: 1704; 98.4% identity (99.2% similar) in 250 aa overlap (1-249:1-250)
10 20 30 40 50 60
pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAWQVSLLELEDWLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::.::::::::::::::::::::::::::::::.:::::::::::::::::::::
XP_011 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
190 200 210 220 230 240
pF1KE5 IW-FHSMASR
:: :::::::
XP_011 IWKFHSMASR
250
>>XP_011514091 (OMIM: 612548) PREDICTED: E3 ubiquitin-pr (486 aa)
initn: 1578 init1: 1578 opt: 1578 Z-score: 1241.0 bits: 238.1 E(85289): 2.2e-62
Smith-Waterman score: 1578; 93.2% identity (96.8% similar) in 249 aa overlap (1-249:1-249)
10 20 30 40 50 60
pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
::::::: ::::::::::::::::: :::::::::::::::::: :::...:::.: :.:
XP_011 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::. ::::::::::.::::::::::::::::::::::::::::::::::::::::
XP_011 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
::.: :::::::::::::::::::::::::::::::::::::::::::::::::::::.:
XP_011 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
190 200 210 220 230 240
pF1KE5 IWFHSMASR
: :::::::
XP_011 IRFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDPA
250 260 270 280 290 300
>>NP_001268379 (OMIM: 612548) E3 ubiquitin-protein ligas (486 aa)
initn: 1578 init1: 1578 opt: 1578 Z-score: 1241.0 bits: 238.1 E(85289): 2.2e-62
Smith-Waterman score: 1578; 93.2% identity (96.8% similar) in 249 aa overlap (1-249:1-249)
10 20 30 40 50 60
pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
::::::: ::::::::::::::::: :::::::::::::::::: :::...:::.: :.:
NP_001 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::. ::::::::::.::::::::::::::::::::::::::::::::::::::::
NP_001 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
::.: :::::::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_001 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
190 200 210 220 230 240
pF1KE5 IWFHSMASR
: :::::::
NP_001 IRFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDPA
250 260 270 280 290 300
>>XP_011514089 (OMIM: 612548) PREDICTED: E3 ubiquitin-pr (304 aa)
initn: 1567 init1: 1534 opt: 1566 Z-score: 1233.8 bits: 236.1 E(85289): 5.5e-62
Smith-Waterman score: 1566; 92.8% identity (96.4% similar) in 250 aa overlap (1-249:1-250)
10 20 30 40 50 60
pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
::::::: ::::::::::::::::: :::::::::::::::::: :::...:::.: :.:
XP_011 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::. ::::::::::.::::::::::::::::::::::::::::::::::::::::
XP_011 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
::.: :::::::::::::::::::::::::::::::::::::::::::::::::::::.:
XP_011 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
190 200 210 220 230 240
pF1KE5 IW-FHSMASR
: :::::::
XP_011 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPGSSPVLAPS
250 260 270 280 290 300
>>NP_835226 (OMIM: 612548) E3 ubiquitin-protein ligase T (487 aa)
initn: 1567 init1: 1534 opt: 1566 Z-score: 1231.7 bits: 236.4 E(85289): 7.3e-62
Smith-Waterman score: 1566; 92.8% identity (96.4% similar) in 250 aa overlap (1-249:1-250)
10 20 30 40 50 60
pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
::::::: ::::::::::::::::: :::::::::::::::::: :::...:::.: :.:
NP_835 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_835 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::. ::::::::::.::::::::::::::::::::::::::::::::::::::::
NP_835 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
::.: :::::::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_835 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
190 200 210 220 230 240
pF1KE5 IW-FHSMASR
: :::::::
NP_835 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
250 260 270 280 290 300
>>NP_001268380 (OMIM: 612548) E3 ubiquitin-protein ligas (487 aa)
initn: 1567 init1: 1534 opt: 1566 Z-score: 1231.7 bits: 236.4 E(85289): 7.3e-62
Smith-Waterman score: 1566; 92.8% identity (96.4% similar) in 250 aa overlap (1-249:1-250)
10 20 30 40 50 60
pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV
::::::: ::::::::::::::::: :::::::::::::::::: :::...:::.: :.:
NP_001 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
:::::::. ::::::::::.::::::::::::::::::::::::::::::::::::::::
NP_001 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF
::.: :::::::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_001 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF
190 200 210 220 230 240
pF1KE5 IW-FHSMASR
: :::::::
NP_001 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP
250 260 270 280 290 300
249 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:39:25 2016 done: Mon Nov 7 22:39:26 2016
Total Scan time: 5.890 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]