FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5223, 249 aa 1>>>pF1KE5223 249 - 249 aa - 249 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1579+/-0.000865; mu= 11.5703+/- 0.052 mean_var=133.4681+/-27.626, 0's: 0 Z-trim(111.0): 142 B-trim: 235 in 1/51 Lambda= 0.111016 statistics sampled from 11886 (12070) to 11886 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.371), width: 16 Scan time: 2.150 The best scores are: opt bits E(32554) CCDS34665.1 TRIM73 gene_id:375593|Hs108|chr7 ( 250) 1714 285.4 2.5e-77 CCDS5545.1 TRIM74 gene_id:378108|Hs108|chr7 ( 250) 1704 283.8 7.4e-77 CCDS34654.1 TRIM50 gene_id:135892|Hs108|chr7 ( 487) 1566 262.0 5.3e-70 CCDS32437.1 TRIM72 gene_id:493829|Hs108|chr16 ( 477) 372 70.8 1.9e-12 CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 ( 513) 354 67.9 1.5e-11 CCDS31392.1 TRIM5 gene_id:85363|Hs108|chr11 ( 326) 342 65.8 4.1e-11 CCDS31394.1 TRIM5 gene_id:85363|Hs108|chr11 ( 347) 342 65.8 4.3e-11 CCDS31393.1 TRIM5 gene_id:85363|Hs108|chr11 ( 493) 342 66.0 5.5e-11 CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 ( 488) 340 65.7 6.8e-11 CCDS78121.1 RPP21 gene_id:202658|Hs108|chr6 ( 503) 340 65.7 7e-11 CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 ( 518) 340 65.7 7.1e-11 >>CCDS34665.1 TRIM73 gene_id:375593|Hs108|chr7 (250 aa) initn: 1712 init1: 1679 opt: 1714 Z-score: 1501.9 bits: 285.4 E(32554): 2.5e-77 Smith-Waterman score: 1714; 98.8% identity (99.6% similar) in 250 aa overlap (1-249:1-250) 10 20 30 40 50 60 pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ :::::::.::::::::::::::::::::::::::::::.::::::::::::::::::::: CCDS34 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF 190 200 210 220 230 240 pF1KE5 IW-FHSMASR :: ::::::: CCDS34 IWKFHSMASR 250 >>CCDS5545.1 TRIM74 gene_id:378108|Hs108|chr7 (250 aa) initn: 1702 init1: 1669 opt: 1704 Z-score: 1493.3 bits: 283.8 E(32554): 7.4e-77 Smith-Waterman score: 1704; 98.4% identity (99.2% similar) in 250 aa overlap (1-249:1-250) 10 20 30 40 50 60 pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MAWQVSLLELEDWLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ :::::::.::::::::::::::::::::::::::::::.::::::::::::::::::::: CCDS55 PVTPVSTVCSRMKEELAALFSELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF 190 200 210 220 230 240 pF1KE5 IW-FHSMASR :: ::::::: CCDS55 IWKFHSMASR 250 >>CCDS34654.1 TRIM50 gene_id:135892|Hs108|chr7 (487 aa) initn: 1567 init1: 1534 opt: 1566 Z-score: 1370.2 bits: 262.0 E(32554): 5.3e-70 Smith-Waterman score: 1566; 92.8% identity (96.4% similar) in 250 aa overlap (1-249:1-250) 10 20 30 40 50 60 pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV ::::::: ::::::::::::::::: :::::::::::::::::: :::...:::.: :.: CCDS34 MAWQVSLPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 DGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 DGSSSLPNVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ :::::::. ::::::::::.:::::::::::::::::::::::::::::::::::::::: CCDS34 PVTPVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 ELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHEF ::.: :::::::::::::::::::::::::::::::::::::::::::::::::::::.: CCDS34 ELHHLVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFGNEDHHKF 190 200 210 220 230 240 pF1KE5 IW-FHSMASR : ::::::: CCDS34 IRKFHSMASRAEMPQARPLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPEPLKLDP 250 260 270 280 290 300 >>CCDS32437.1 TRIM72 gene_id:493829|Hs108|chr16 (477 aa) initn: 332 init1: 175 opt: 372 Z-score: 336.8 bits: 70.8 E(32554): 1.9e-12 Smith-Waterman score: 372; 28.2% identity (58.1% similar) in 248 aa overlap (10-248:8-245) 10 20 30 40 50 pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCL--VSLSYHLDTKVRCPMCWQ :...:.::.::..: . .::::.:..:: :. : : :: : CCDS32 MSAAPGLLHQELSCPLCLQLFDAPVTAECGHSFCRACLGRVAGEPAADGTVLCPCCQA 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 VVDGSSSLPNVSLAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQ . .. :..:: ..:. : :. . : .: .:::..::.:. :.::.:. ::::. CCDS32 PTRPQALSTNLQLARLVEG--LAQVPQGH-CEEHLDPLSIYCEQDRALVCGVCASLGSHR 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 HHPVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRRE : . :.. .:.: .: .:.. . .. .: : .. ... . : .. .. CCDS32 GHRLLPAAEAHARLKTQLPQQKLQLQEACMRKEKSVAVLEHQLVEVEETVRQFRGAVGEQ 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 FQELR-------HPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQ . ..: .:.: : : : ..::. ::: : : : :::. CCDS32 LGKMRVFLAALEGSLDREAERVRGEAGVALRRELGSLNSYLEQ-------LRQMEKVLEE 180 190 200 210 220 240 pF1KE5 FGNEDHHEFIWFHSMASR ... . ::. . ... CCDS32 VADKPQTEFLMKYCLVTSRLQKILAESPPPARLDIQLPIISDDFKFQVWRKMFRALMPAL 230 240 250 260 270 280 >>CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 (513 aa) initn: 376 init1: 185 opt: 354 Z-score: 320.9 bits: 67.9 E(32554): 1.5e-11 Smith-Waterman score: 354; 32.3% identity (58.3% similar) in 192 aa overlap (10-194:10-201) 10 20 30 40 50 60 pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVV :... ::.::. : : .::.:::. : .::. .:.: ::.: .. CCDS46 MASGSVAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETNVSCPQCRETF 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 DGSSSLPNVSLAWV---IEALRL--PGDP--EPKVCVHHRNPLSLFCEKDQELICGLCGL :: :: : .. :: :. : : :: .::.::.:.::.:: :: .: CCDS46 PQRHMRPNRHLANVTQLVKQLRTERPSGPGGEMGVCEKHREPLKLYCEEDQMPICVVCDR 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 LGSHQHHPVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSW :. : : :. .::.. ...::. . . :. . :..... ... CCDS46 SREHRGHSVLPLEEAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARAELLSLTQMERE 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 VIRREFQELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERLAQAECVLEQFG : ::..: : . :.. : : CCDS46 KIVWEFEQLYHSLKEHEYRLLARLEELDLAIYNSINGAITQFSCNISHLSSLIAQLEEKQ 190 200 210 220 230 240 >>CCDS31392.1 TRIM5 gene_id:85363|Hs108|chr11 (326 aa) initn: 339 init1: 161 opt: 342 Z-score: 312.9 bits: 65.8 E(32554): 4.1e-11 Smith-Waterman score: 342; 28.1% identity (62.1% similar) in 235 aa overlap (7-230:6-240) 10 20 30 40 50 pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVS--LSYHLDT-KVRCPMCW :....... ::::::.. . : :.::::.:..::.. . :: . ::.: CCDS31 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 QVVDGSSSLPNVSLAWVIEALR-LPGDPE-PKV--CVHHRNPLSLFCEKDQELICGLCGL . . :: .: ..: :: . .:: :: :..: . : :::..: ..:: :: CCDS31 ISYQPENIRPNRHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCER 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 LGSHQHHPVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSW :. : . . . ... .: : . :.:.:....:: : . .... .. . . CCDS31 SQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKT 120 130 140 150 160 170 180 190 200 210 220 pF1KE5 VIRREFQELRHPVDEEKARCLEGIGGHTRGLVASLDMQ----LEQAQGTRERLAQAECVL . .:..:: .: :.. :... . . .. :: . ..:.:. :: ... : : CCDS31 NVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHRL 180 190 200 210 220 230 230 240 pF1KE5 EQFGNEDHHEFIWFHSMASR . CCDS31 QGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYWG 240 250 260 270 280 290 >>CCDS31394.1 TRIM5 gene_id:85363|Hs108|chr11 (347 aa) initn: 339 init1: 161 opt: 342 Z-score: 312.6 bits: 65.8 E(32554): 4.3e-11 Smith-Waterman score: 342; 28.1% identity (62.1% similar) in 235 aa overlap (7-230:6-240) 10 20 30 40 50 pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVS--LSYHLDT-KVRCPMCW :....... ::::::.. . : :.::::.:..::.. . :: . ::.: CCDS31 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 QVVDGSSSLPNVSLAWVIEALR-LPGDPE-PKV--CVHHRNPLSLFCEKDQELICGLCGL . . :: .: ..: :: . .:: :: :..: . : :::..: ..:: :: CCDS31 ISYQPENIRPNRHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCER 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 LGSHQHHPVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSW :. : . . . ... .: : . :.:.:....:: : . .... .. . . CCDS31 SQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKT 120 130 140 150 160 170 180 190 200 210 220 pF1KE5 VIRREFQELRHPVDEEKARCLEGIGGHTRGLVASLDMQ----LEQAQGTRERLAQAECVL . .:..:: .: :.. :... . . .. :: . ..:.:. :: ... : : CCDS31 NVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHRL 180 190 200 210 220 230 230 240 pF1KE5 EQFGNEDHHEFIWFHSMASR . CCDS31 QGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYWG 240 250 260 270 280 290 >>CCDS31393.1 TRIM5 gene_id:85363|Hs108|chr11 (493 aa) initn: 339 init1: 161 opt: 342 Z-score: 310.7 bits: 66.0 E(32554): 5.5e-11 Smith-Waterman score: 342; 28.1% identity (62.1% similar) in 235 aa overlap (7-230:6-240) 10 20 30 40 50 pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVS--LSYHLDT-KVRCPMCW :....... ::::::.. . : :.::::.:..::.. . :: . ::.: CCDS31 MASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 QVVDGSSSLPNVSLAWVIEALR-LPGDPE-PKV--CVHHRNPLSLFCEKDQELICGLCGL . . :: .: ..: :: . .:: :: :..: . : :::..: ..:: :: CCDS31 ISYQPENIRPNRHVANIVEKLREVKLSPEGQKVDHCARHGEKLLLFCQEDGKVICWLCER 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 LGSHQHHPVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRTRIVNESDVFSW :. : . . . ... .: : . :.:.:....:: : . .... .. . . CCDS31 SQEHRGHHTFLTEEVAREYQVKLQAALEMLRQKQQEAEELEADIREEKASWKTQIQYDKT 120 130 140 150 160 170 180 190 200 210 220 pF1KE5 VIRREFQELRHPVDEEKARCLEGIGGHTRGLVASLDMQ----LEQAQGTRERLAQAECVL . .:..:: .: :.. :... . . .. :: . ..:.:. :: ... : : CCDS31 NVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSLRELISDLEHRL 180 190 200 210 220 230 230 240 pF1KE5 EQFGNEDHHEFIWFHSMASR . CCDS31 QGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAPDLKGMLEVFRELTDVRRYWV 240 250 260 270 280 290 >>CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 (488 aa) initn: 349 init1: 191 opt: 340 Z-score: 309.0 bits: 65.7 E(32554): 6.8e-11 Smith-Waterman score: 340; 28.4% identity (61.6% similar) in 190 aa overlap (6-190:19-208) 10 20 30 40 pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHL .: .:. . .: .::: .:: ....:::..::.:.. : CCDS34 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE5 DTKVRCPMCWQVVDGSSSLPNVSLAWVIEALRLPGDPEPKV-----CVHHRNPLSLFCEK . ::.: .. : :: .:. ..: . . :. : .:.. ::::: . CCDS34 ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYE 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE5 DQELICGLCGLLGSHQHHPVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRT ::: .: .:.. .:. : :.:.. ...::.: . :.:. ... . .. .. CCDS34 DQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEKKPG 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE5 RIVNESDVFSWVIRREFQELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERL .. . : :::.::.. .:::. CCDS34 ELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDL 190 200 210 220 230 240 >>CCDS78121.1 RPP21 gene_id:202658|Hs108|chr6 (503 aa) initn: 349 init1: 191 opt: 340 Z-score: 308.9 bits: 65.7 E(32554): 7e-11 Smith-Waterman score: 340; 28.4% identity (61.6% similar) in 190 aa overlap (6-190:19-208) 10 20 30 40 pF1KE5 MAWQVSLLELEDRLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHL .: .:. . .: .::: .:: ....:::..::.:.. : CCDS78 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE5 DTKVRCPMCWQVVDGSSSLPNVSLAWVIEALRLPGDPEPKV-----CVHHRNPLSLFCEK . ::.: .. : :: .:. ..: . . :. : .:.. ::::: . CCDS78 ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYE 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE5 DQELICGLCGLLGSHQHHPVTPVSTICSRMKEELAALFSELKQEQKKVDELIAKLVNNRT ::: .: .:.. .:. : :.:.. ...::.: . :.:. ... . .. .. CCDS78 DQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEKKPG 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE5 RIVNESDVFSWVIRREFQELRHPVDEEKARCLEGIGGHTRGLVASLDMQLEQAQGTRERL .. . : :::.::.. .:::. CCDS78 ELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDL 190 200 210 220 230 240 249 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:39:24 2016 done: Mon Nov 7 22:39:24 2016 Total Scan time: 2.150 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]