FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5222, 256 aa
  1>>>pF1KE5222 256 - 256 aa - 256 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6462+/-0.000825; mu= 12.6167+/- 0.049
 mean_var=59.5830+/-11.985, 0's: 0 Z-trim(105.8): 22  B-trim: 151 in 2/47
 Lambda= 0.166155
 statistics sampled from 8641 (8651) to 8641 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.266), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS11719.1 MIF4GD gene_id:57409|Hs108|chr17       ( 256) 1715 419.3 1.3e-117
CCDS58598.1 MIF4GD gene_id:57409|Hs108|chr17       ( 263) 1691 413.6  7e-116
CCDS56044.1 MIF4GD gene_id:57409|Hs108|chr17       ( 222) 1306 321.3 3.6e-88
CCDS11935.1 CTIF gene_id:9811|Hs108|chr18          ( 598)  340 89.8 4.6e-18
CCDS45864.1 CTIF gene_id:9811|Hs108|chr18          ( 600)  340 89.8 4.7e-18


>>CCDS11719.1 MIF4GD gene_id:57409|Hs108|chr17            (256 aa)
 initn: 1715 init1: 1715 opt: 1715  Z-score: 2225.2  bits: 419.3 E(32554): 1.3e-117
Smith-Waterman score: 1715; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)

               10        20        30        40        50        60
pF1KE5 MGEPSREEYKIQSFDAETQQLLKTALKVACFETEDGEYSVCQRSYSNCSRLMPSRCNTQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGEPSREEYKIQSFDAETQQLLKTALKVACFETEDGEYSVCQRSYSNCSRLMPSRCNTQY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RDPGAVDLEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RDPGAVDLEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 YQAREQLRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFRLAQPDSLSKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YQAREQLRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFRLAQPDSLSKEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 EVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEIIEFRAAGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEIIEFRAAGW
              190       200       210       220       230       240

              250      
pF1KE5 KTTPAAHKYYYSEVSD
       ::::::::::::::::
CCDS11 KTTPAAHKYYYSEVSD
              250      

>>CCDS58598.1 MIF4GD gene_id:57409|Hs108|chr17            (263 aa)
 initn: 1546 init1: 1546 opt: 1691  Z-score: 2193.9  bits: 413.6 E(32554): 7e-116
Smith-Waterman score: 1691; 97.3% identity (97.3% similar) in 263 aa overlap (1-256:1-263)

               10        20               30        40        50   
pF1KE5 MGEPSREEYKIQSFDAETQQLLKTALK-------VACFETEDGEYSVCQRSYSNCSRLMP
       :::::::::::::::::::::::::::       ::::::::::::::::::::::::::
CCDS58 MGEPSREEYKIQSFDAETQQLLKTALKAPSLECTVACFETEDGEYSVCQRSYSNCSRLMP
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KE5 SRCNTQYRDPGAVDLEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SRCNTQYRDPGAVDLEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGL
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KE5 LNRLQQEYQAREQLRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFRLAQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LNRLQQEYQAREQLRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFRLAQP
              130       140       150       160       170       180

           180       190       200       210       220       230   
pF1KE5 DSLSKEEEVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DSLSKEEEVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEII
              190       200       210       220       230       240

           240       250      
pF1KE5 EFRAAGWKTTPAAHKYYYSEVSD
       :::::::::::::::::::::::
CCDS58 EFRAAGWKTTPAAHKYYYSEVSD
              250       260   

>>CCDS56044.1 MIF4GD gene_id:57409|Hs108|chr17            (222 aa)
 initn: 1306 init1: 1306 opt: 1306  Z-score: 1696.4  bits: 321.3 E(32554): 3.6e-88
Smith-Waterman score: 1391; 86.7% identity (86.7% similar) in 256 aa overlap (1-256:1-222)

               10        20        30        40        50        60
pF1KE5 MGEPSREEYKIQSFDAETQQLLKTALKVACFETEDGEYSVCQRSYSNCSRLMPSRCNTQY
       :::::::::::::::::::::::::::                                 
CCDS56 MGEPSREEYKIQSFDAETQQLLKTALK---------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KE5 RDPGAVDLEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQE
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 -DPGAVDLEKVANVIVDHSLQDCVFSKEAGRMCYAIIQAESKQAGQSVFRRGLLNRLQQE
         30        40        50        60        70        80      

              130       140       150       160       170       180
pF1KE5 YQAREQLRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFRLAQPDSLSKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YQAREQLRARSLQGWVCYVTFICNIFDYLRVNNMPMMALVNPVYDCLFRLAQPDSLSKEE
         90       100       110       120       130       140      

              190       200       210       220       230       240
pF1KE5 EVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEIIEFRAAGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDGFLLPTGLSSLAQLLLLEIIEFRAAGW
        150       160       170       180       190       200      

              250      
pF1KE5 KTTPAAHKYYYSEVSD
       ::::::::::::::::
CCDS56 KTTPAAHKYYYSEVSD
        210       220  

>>CCDS11935.1 CTIF gene_id:9811|Hs108|chr18               (598 aa)
 initn: 247 init1: 199 opt: 340  Z-score: 437.7  bits: 89.8 E(32554): 4.6e-18
Smith-Waterman score: 340; 33.2% identity (69.0% similar) in 187 aa overlap (68-250:410-589)

        40        50        60        70        80        90       
pF1KE5 YSVCQRSYSNCSRLMPSRCNTQYRDPGAVDLEKVANVIVDHSLQDCVFSKEAGRMC--YA
                                     : ... .: .....:  :.  :...:  .:
CCDS11 NSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCDKMA
     380       390       400       410       420       430         

         100       110       120       130       140       150     
pF1KE5 IIQAESKQAGQSVFRRGLLNRLQQEYQAREQLRARSLQGWVCYVTFICNIFDYLRVNN-M
       ....:. .     ::  ::: ::... .::.:. .... :. ..::.:..:  .: ..  
CCDS11 LFMVEGTK-----FRSLLLNMLQKDFTVREELQQQDVERWLGFITFLCEVFGTMRSSTGE
     440            450       460       470       480       490    

          160       170       180       190       200       210    
pF1KE5 PMMALVNPVYDCLFRLAQPDSLSKEEEVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDG
       :. .:: :.: :: .: : ... ::. : :  ..:. .:. ::..  . : ::..  :: 
CCDS11 PFRVLVCPIYTCLRELLQSQDV-KEDAVLCCSMELQSTGRLLEEQLPEMMTELLASARDK
          500       510        520       530       540       550   

          220       230       240        250         
pF1KE5 FLLPTGLSSLAQLLLLEIIEFRAAGWKT-TPAAHKYYYSEVSD   
       .: :.  : :.. ::::.::..: .:.  ::   .::         
CCDS11 MLCPSE-SMLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA
            560       570       580       590        

>>CCDS45864.1 CTIF gene_id:9811|Hs108|chr18               (600 aa)
 initn: 247 init1: 199 opt: 340  Z-score: 437.7  bits: 89.8 E(32554): 4.7e-18
Smith-Waterman score: 340; 33.2% identity (69.0% similar) in 187 aa overlap (68-250:412-591)

        40        50        60        70        80        90       
pF1KE5 YSVCQRSYSNCSRLMPSRCNTQYRDPGAVDLEKVANVIVDHSLQDCVFSKEAGRMC--YA
                                     : ... .: .....:  :.  :...:  .:
CCDS45 NSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCDKMA
             390       400       410       420       430       440 

         100       110       120       130       140       150     
pF1KE5 IIQAESKQAGQSVFRRGLLNRLQQEYQAREQLRARSLQGWVCYVTFICNIFDYLRVNN-M
       ....:. .     ::  ::: ::... .::.:. .... :. ..::.:..:  .: ..  
CCDS45 LFMVEGTK-----FRSLLLNMLQKDFTVREELQQQDVERWLGFITFLCEVFGTMRSSTGE
                  450       460       470       480       490      

          160       170       180       190       200       210    
pF1KE5 PMMALVNPVYDCLFRLAQPDSLSKEEEVDCLVLQLHRVGEQLEKMNGQRMDELFVLIRDG
       :. .:: :.: :: .: : ... ::. : :  ..:. .:. ::..  . : ::..  :: 
CCDS45 PFRVLVCPIYTCLRELLQSQDV-KEDAVLCCSMELQSTGRLLEEQLPEMMTELLASARDK
        500       510        520       530       540       550     

          220       230       240        250         
pF1KE5 FLLPTGLSSLAQLLLLEIIEFRAAGWKT-TPAAHKYYYSEVSD   
       .: :.  : :.. ::::.::..: .:.  ::   .::         
CCDS45 MLCPSE-SMLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA
         560        570       580       590       600




256 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:38:56 2016 done: Mon Nov  7 22:38:56 2016
 Total Scan time:  2.290 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]