FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1438, 295 aa
  1>>>pF1KE1438 295 - 295 aa - 295 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6191+/-0.000767; mu= 13.0055+/- 0.046
 mean_var=55.7348+/-11.133, 0's: 0 Z-trim(106.6): 20  B-trim: 0 in 0/50
 Lambda= 0.171795
 statistics sampled from 9096 (9104) to 9096 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.28), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS4876.1 GNMT gene_id:27232|Hs108|chr6           ( 295) 2018 508.1 3.2e-144


>>CCDS4876.1 GNMT gene_id:27232|Hs108|chr6                (295 aa)
 initn: 2018 init1: 2018 opt: 2018  Z-score: 2702.8  bits: 508.1 E(32554): 3.2e-144
Smith-Waterman score: 2018; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)

               10        20        30        40        50        60
pF1KE1 MVDSVYRTRSLGVAAEGLPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MVDSVYRTRSLGVAAEGLPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRHEPAFDKWVIEEANWMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRHEPAFDKWVIEEANWMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LDKDVPQSAEGGFDAVICLGNSFAHLPDCKGDQSEHRLALKNIASMVRAGGLLVIDHRNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LDKDVPQSAEGGFDAVICLGNSFAHLPDCKGDQSEHRLALKNIASMVRAGGLLVIDHRNY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DHILSTGCAPPGKNIYYKSDLTKDVTTSVLIVNNKAHMVTLDYTVQVPGAGQDGSPGLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DHILSTGCAPPGKNIYYKSDLTKDVTTSVLIVNNKAHMVTLDYTVQVPGAGQDGSPGLSK
              190       200       210       220       230       240

              250       260       270       280       290     
pF1KE1 FRLSYYPHCLASFTELLQAAFGGKCQHSVLGDFKPYKPGQTYIPCYFIHVLKRTD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 FRLSYYPHCLASFTELLQAAFGGKCQHSVLGDFKPYKPGQTYIPCYFIHVLKRTD
              250       260       270       280       290     




295 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:04:23 2016 done: Mon Nov  7 00:04:24 2016
 Total Scan time:  2.280 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]