FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6246, 267 aa 1>>>pF1KE6246 267 - 267 aa - 267 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9300+/-0.000733; mu= 12.3701+/- 0.044 mean_var=84.9660+/-16.281, 0's: 0 Z-trim(110.1): 12 B-trim: 0 in 0/52 Lambda= 0.139140 statistics sampled from 11338 (11346) to 11338 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.349), width: 16 Scan time: 2.160 The best scores are: opt bits E(32554) CCDS6168.1 PENK gene_id:5179|Hs108|chr8 ( 267) 1833 377.3 6.2e-105 CCDS13023.1 PDYN gene_id:5173|Hs108|chr20 ( 254) 330 75.6 3.9e-14 >>CCDS6168.1 PENK gene_id:5179|Hs108|chr8 (267 aa) initn: 1833 init1: 1833 opt: 1833 Z-score: 1997.4 bits: 377.3 E(32554): 6.2e-105 Smith-Waterman score: 1833; 100.0% identity (100.0% similar) in 267 aa overlap (1-267:1-267) 10 20 30 40 50 60 pF1KE6 MARFLTLCTWLLLLGPGLLATVRAECSQDCATCSYRLVRPADINFLACVMECEGKLPSLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 MARFLTLCTWLLLLGPGLLATVRAECSQDCATCSYRLVRPADINFLACVMECEGKLPSLK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 IWETCKELLQLSKPELPQDGTSTLRENSKPEESHLLAKRYGGFMKRYGGFMKKMDELYPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 IWETCKELLQLSKPELPQDGTSTLRENSKPEESHLLAKRYGGFMKRYGGFMKKMDELYPM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 EPEEEANGSEILAKRYGGFMKKDAEEDDSLANSSDLLKELLETGDNRERSHHQDGSDNEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 EPEEEANGSEILAKRYGGFMKKDAEEDDSLANSSDLLKELLETGDNRERSHHQDGSDNEE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 EVSKRYGGFMRGLKRSPQLEDEAKELQKRYGGFMRRVGRPEWWMDYQKRYGGFLKRFAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 EVSKRYGGFMRGLKRSPQLEDEAKELQKRYGGFMRRVGRPEWWMDYQKRYGGFLKRFAEA 190 200 210 220 230 240 250 260 pF1KE6 LPSDEEGESYSKEVPEMEKRYGGFMRF ::::::::::::::::::::::::::: CCDS61 LPSDEEGESYSKEVPEMEKRYGGFMRF 250 260 >>CCDS13023.1 PDYN gene_id:5173|Hs108|chr20 (254 aa) initn: 326 init1: 102 opt: 330 Z-score: 367.2 bits: 75.6 E(32554): 3.9e-14 Smith-Waterman score: 330; 31.8% identity (57.3% similar) in 255 aa overlap (18-254:14-251) 10 20 30 40 50 pF1KE6 MARFLTLCTWLLLLGPGLLATVRAECSQDCATCSYRLVR-PADINFLACVMECEGKL-PS .. .. :.: . :. :. . : :: : : ..:.. : :: CCDS13 MAWQGLVLAACLLMFPSTTADCLSRCSLCAVKTQDGPKPINPLICSLQCQAALLPS 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 LKIWETCKELLQLSKPELPQDGTSTLRENSKPE--ESHLLAKRYGGFMKRYGGFMKKMDE . :: :. .:.. : ::: :.: . . . :. . : :.:.:.... CCDS13 EE-WERCQSFLSFFTP-------STLGLNDKEDLGSKSVGEGPYSELAKLSGSFLKELEK 60 70 80 90 100 120 130 140 150 160 170 pF1KE6 --LYPMEPEEEANGSEILAKRYGGF---MKKDAEEDDSLANSSDLLKELLETGDNRERSH . : .: . :. : .. :. ... :: . : ...: .::: . CCDS13 SKFLPSISTKENTLSKSLEEKLRGLSDGFREGAESE--LMRDAQLNDGAMETG-----TL 110 120 130 140 150 160 180 190 200 210 220 pF1KE6 HQDGSDNEEEVSKRYGGFMRGL-KRSPQLEDEA-------KELQKRYGGFMRRVGRPEWW . : .:.: ::::::.: ::: .. :. ..: ::::::.::. ::. CCDS13 YLAEEDPKEQV-KRYGGFLRKYPKRSSEVAGEGDGDSMGHEDLYKRYGGFLRRI-RPKLK 170 180 190 200 210 230 240 250 260 pF1KE6 MDYQKRYGGFLKR-FAEALPSDEEGESYSKEVPEMEKRYGGFMRF : ::::::::.: : . :.:. ..:: :. CCDS13 WDNQKRYGGFLRRQFKVVTRSQEDPNAYSGELFDA 220 230 240 250 267 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:25:35 2016 done: Tue Nov 8 11:25:36 2016 Total Scan time: 2.160 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]