FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9901, 256 aa
  1>>>pF1KB9901 256 - 256 aa - 256 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7919+/-0.000655; mu= 4.4735+/- 0.040
 mean_var=141.8266+/-27.941, 0's: 0 Z-trim(116.3): 9  B-trim: 0 in 0/53
 Lambda= 0.107695
 statistics sampled from 16885 (16892) to 16885 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.519), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS8472.1 TIRAP gene_id:114609|Hs108|chr11        ( 221) 1507 244.5 4.7e-65
CCDS41731.1 TIRAP gene_id:114609|Hs108|chr11       ( 235) 1472 239.1 2.1e-63


>>CCDS8472.1 TIRAP gene_id:114609|Hs108|chr11             (221 aa)
 initn: 1507 init1: 1507 opt: 1507  Z-score: 1281.5  bits: 244.5 E(32554): 4.7e-65
Smith-Waterman score: 1507; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KB9 MASSTSLPAPGSRPKKPLGKMADWFRQTLLKKPKKRPNSPESTSSDASQPTSQDSPLPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MASSTSLPAPGSRPKKPLGKMADWFRQTLLKKPKKRPNSPESTSSDASQPTSQDSPLPPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LSSVTSPSLPPTHASDSGSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 LSSVTSPSLPPTHASDSGSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 RDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLSWHLLYHGTPEIGVKLETEN
       :::::::::::::::::::::::::::::::::::::::::                   
CCDS84 GLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLS                   
              190       200       210       220                    

              250      
pF1KB9 PCRASDSHKCDKRYRE

>>CCDS41731.1 TIRAP gene_id:114609|Hs108|chr11            (235 aa)
 initn: 1472 init1: 1472 opt: 1472  Z-score: 1251.7  bits: 239.1 E(32554): 2.1e-63
Smith-Waterman score: 1472; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)

               10        20        30        40        50        60
pF1KB9 MASSTSLPAPGSRPKKPLGKMADWFRQTLLKKPKKRPNSPESTSSDASQPTSQDSPLPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MASSTSLPAPGSRPKKPLGKMADWFRQTLLKKPKKRPNSPESTSSDASQPTSQDSPLPPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LSSVTSPSLPPTHASDSGSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LSSVTSPSLPPTHASDSGSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTLSWHLLYHGTPEIGVKLETEN
       :::::::::::::::::::::::::::::::::::                         
CCDS41 GLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRCKLLQEGEGERDSATVSDLL     
              190       200       210       220       230          

              250      
pF1KB9 PCRASDSHKCDKRYRE




256 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:04:57 2016 done: Mon Nov  7 00:04:58 2016
 Total Scan time:  2.870 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]