FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6219, 182 aa 1>>>pF1KE6219 182 - 182 aa - 182 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9802+/-0.000342; mu= 6.0185+/- 0.021 mean_var=129.0210+/-26.266, 0's: 0 Z-trim(119.1): 22 B-trim: 1065 in 1/52 Lambda= 0.112913 statistics sampled from 32772 (32808) to 32772 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.385), width: 16 Scan time: 5.200 The best scores are: opt bits E(85289) NP_003273 (OMIM: 191043,601680) troponin I, fast s ( 182) 1191 204.3 8.7e-53 NP_001139301 (OMIM: 191043,601680) troponin I, fas ( 182) 1191 204.3 8.7e-53 NP_001139313 (OMIM: 191043,601680) troponin I, fas ( 182) 1161 199.5 2.6e-51 NP_003272 (OMIM: 191042) troponin I, slow skeletal ( 187) 694 123.4 2.1e-28 NP_000354 (OMIM: 115210,191044,611880,613286,61369 ( 210) 677 120.7 1.6e-27 >>NP_003273 (OMIM: 191043,601680) troponin I, fast skele (182 aa) initn: 1191 init1: 1191 opt: 1191 Z-score: 1068.7 bits: 204.3 E(85289): 8.7e-53 Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 pF1KE6 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES 130 140 150 160 170 180 pF1KE6 ES :: NP_003 ES >>NP_001139301 (OMIM: 191043,601680) troponin I, fast sk (182 aa) initn: 1191 init1: 1191 opt: 1191 Z-score: 1068.7 bits: 204.3 E(85289): 8.7e-53 Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 pF1KE6 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES 130 140 150 160 170 180 pF1KE6 ES :: NP_001 ES >>NP_001139313 (OMIM: 191043,601680) troponin I, fast sk (182 aa) initn: 1161 init1: 1161 opt: 1161 Z-score: 1042.3 bits: 199.5 E(85289): 2.6e-51 Smith-Waterman score: 1161; 97.8% identity (99.5% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 pF1KE6 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE :.. .::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSQCKKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES 130 140 150 160 170 180 pF1KE6 ES :: NP_001 ES >>NP_003272 (OMIM: 191042) troponin I, slow skeletal mus (187 aa) initn: 580 init1: 458 opt: 694 Z-score: 631.0 bits: 123.4 E(85289): 2.1e-28 Smith-Waterman score: 694; 58.6% identity (83.4% similar) in 181 aa overlap (1-180:1-180) 10 20 30 40 50 pF1KE6 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPG-SMS : . :.. . ..:. :::.:: : :.:. .::::: ::::. : :. : :.: NP_003 MPEVERKPKITASRKLLLKSLMLAKAKECWEQEHEEREAEKVRYLAERIPTLQTRGLSLS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 EVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSA .:.::..::::.....::.::.:.. ....:..:.. :..:::::::::::::::.:: NP_003 ALQDLCRELHAKVEVVDEERYDIEAKCLHNTREIKDLKLKVMDLRGKFKRPPLRRVRVSA 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE6 DAMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFE ::::.::::::::: ::::::::.:::::::::: . .:::::::.: ::::::::::. NP_003 DAMLRALLGSKHKVSMDLRANLKSVKKEDTEKERPV-EVGDWRKNVEAMSGMEGRKKMFD 130 140 150 160 170 180 pF1KE6 SES . NP_003 AAKSPTSQ 180 >>NP_000354 (OMIM: 115210,191044,611880,613286,613690) t (210 aa) initn: 532 init1: 430 opt: 677 Z-score: 615.3 bits: 120.7 E(85289): 1.6e-27 Smith-Waterman score: 677; 57.1% identity (83.6% similar) in 177 aa overlap (5-180:36-210) 10 20 30 pF1KE6 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEE .:... ..:. .::...:::: :::.: NP_000 SDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELEREA 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 SRREAEKQNYLAEHCPPLHIPG-SMSEVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKEL .:..:: :. .: ::.. : ...:.:.::.::::..: ..::.::.:..: :. :. NP_000 EERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEI 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE6 EDMNQKLFDLRGKFKRPPLRRVRMSADAMLKALLGSKHKVCMDLRANLKQVKKEDTEKER :..::.:::::::::: :::::.:::::..::::.. : .::::.:::::::::::: NP_000 ADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN 130 140 150 160 170 180 160 170 180 pF1KE6 DLRDVGDWRKNIEEKSGMEGRKKMFESES :.::::::::. :::::::: ::: NP_000 --REVGDWRKNIDALSGMEGRKKKFES 190 200 210 182 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:11:44 2016 done: Tue Nov 8 11:11:45 2016 Total Scan time: 5.200 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]