FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6219, 182 aa 1>>>pF1KE6219 182 - 182 aa - 182 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9315+/-0.000811; mu= 6.1201+/- 0.049 mean_var=117.7238+/-23.533, 0's: 0 Z-trim(111.8): 20 B-trim: 84 in 1/50 Lambda= 0.118207 statistics sampled from 12617 (12633) to 12617 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.388), width: 16 Scan time: 2.020 The best scores are: opt bits E(32554) CCDS31333.1 TNNI2 gene_id:7136|Hs108|chr11 ( 182) 1191 213.1 7.5e-56 CCDS53594.1 TNNI2 gene_id:7136|Hs108|chr11 ( 182) 1161 208.0 2.6e-54 CCDS1411.1 TNNI1 gene_id:7135|Hs108|chr1 ( 187) 694 128.4 2.5e-30 CCDS42628.1 TNNI3 gene_id:7137|Hs108|chr19 ( 210) 677 125.5 2.1e-29 >>CCDS31333.1 TNNI2 gene_id:7136|Hs108|chr11 (182 aa) initn: 1191 init1: 1191 opt: 1191 Z-score: 1116.2 bits: 213.1 E(32554): 7.5e-56 Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 pF1KE6 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES 130 140 150 160 170 180 pF1KE6 ES :: CCDS31 ES >>CCDS53594.1 TNNI2 gene_id:7136|Hs108|chr11 (182 aa) initn: 1161 init1: 1161 opt: 1161 Z-score: 1088.5 bits: 208.0 E(32554): 2.6e-54 Smith-Waterman score: 1161; 97.8% identity (99.5% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 pF1KE6 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE :.. .::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MSQCKKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPGSMSE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 VQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSAD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 AMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFES 130 140 150 160 170 180 pF1KE6 ES :: CCDS53 ES >>CCDS1411.1 TNNI1 gene_id:7135|Hs108|chr1 (187 aa) initn: 580 init1: 458 opt: 694 Z-score: 657.9 bits: 128.4 E(32554): 2.5e-30 Smith-Waterman score: 694; 58.6% identity (83.4% similar) in 181 aa overlap (1-180:1-180) 10 20 30 40 50 pF1KE6 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEESRREAEKQNYLAEHCPPLHIPG-SMS : . :.. . ..:. :::.:: : :.:. .::::: ::::. : :. : :.: CCDS14 MPEVERKPKITASRKLLLKSLMLAKAKECWEQEHEEREAEKVRYLAERIPTLQTRGLSLS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 EVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKELEDMNQKLFDLRGKFKRPPLRRVRMSA .:.::..::::.....::.::.:.. ....:..:.. :..:::::::::::::::.:: CCDS14 ALQDLCRELHAKVEVVDEERYDIEAKCLHNTREIKDLKLKVMDLRGKFKRPPLRRVRVSA 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE6 DAMLKALLGSKHKVCMDLRANLKQVKKEDTEKERDLRDVGDWRKNIEEKSGMEGRKKMFE ::::.::::::::: ::::::::.:::::::::: . .:::::::.: ::::::::::. CCDS14 DAMLRALLGSKHKVSMDLRANLKSVKKEDTEKERPV-EVGDWRKNVEAMSGMEGRKKMFD 130 140 150 160 170 180 pF1KE6 SES . CCDS14 AAKSPTSQ 180 >>CCDS42628.1 TNNI3 gene_id:7137|Hs108|chr19 (210 aa) initn: 532 init1: 430 opt: 677 Z-score: 641.5 bits: 125.5 E(32554): 2.1e-29 Smith-Waterman score: 677; 57.1% identity (83.6% similar) in 177 aa overlap (5-180:36-210) 10 20 30 pF1KE6 MGDEEKRNRAITARRQHLKSVMLQIAATELEKEE .:... ..:. .::...:::: :::.: CCDS42 SDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELEREA 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 SRREAEKQNYLAEHCPPLHIPG-SMSEVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKEL .:..:: :. .: ::.. : ...:.:.::.::::..: ..::.::.:..: :. :. CCDS42 EERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEI 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE6 EDMNQKLFDLRGKFKRPPLRRVRMSADAMLKALLGSKHKVCMDLRANLKQVKKEDTEKER :..::.:::::::::: :::::.:::::..::::.. : .::::.:::::::::::: CCDS42 ADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN 130 140 150 160 170 180 160 170 180 pF1KE6 DLRDVGDWRKNIEEKSGMEGRKKMFESES :.::::::::. :::::::: ::: CCDS42 --REVGDWRKNIDALSGMEGRKKKFES 190 200 210 182 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:11:44 2016 done: Tue Nov 8 11:11:44 2016 Total Scan time: 2.020 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]