Result of FASTA (omim) for
pFN21AB6346
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6346, 291 aa
1>>>pF1KB6346 291 - 291 aa - 291 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4251+/-0.000269; mu= 16.3269+/- 0.017
mean_var=93.8766+/-18.218, 0's: 0 Z-trim(121.8): 251 B-trim: 0 in 0/56
Lambda= 0.132372
statistics sampled from 38732 (39013) to 38732 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.457), width: 16
Scan time: 8.240
The best scores are: opt bits E(85289)
NP_001662 (OMIM: 108360) asialoglycoprotein recept ( 291) 2082 406.9 2.3e-113
XP_011522163 (OMIM: 108360) PREDICTED: asialoglyco ( 291) 2082 406.9 2.3e-113
NP_001184145 (OMIM: 108360) asialoglycoprotein rec ( 252) 1657 325.7 5.6e-89
NP_550435 (OMIM: 108361) asialoglycoprotein recept ( 287) 1293 256.3 5.1e-68
XP_006721589 (OMIM: 108361) PREDICTED: asialoglyco ( 287) 1293 256.3 5.1e-68
XP_005256705 (OMIM: 108361) PREDICTED: asialoglyco ( 287) 1293 256.3 5.1e-68
NP_550436 (OMIM: 108361) asialoglycoprotein recept ( 292) 1273 252.4 7.4e-67
XP_016880140 (OMIM: 108361) PREDICTED: asialoglyco ( 292) 1273 252.4 7.4e-67
NP_001316999 (OMIM: 605999) C-type lectin domain f ( 289) 1251 248.2 1.3e-65
NP_006335 (OMIM: 605999) C-type lectin domain fami ( 292) 1250 248.1 1.5e-65
NP_001188281 (OMIM: 108361) asialoglycoprotein rec ( 306) 1228 243.9 2.9e-64
XP_016880142 (OMIM: 108361) PREDICTED: asialoglyco ( 311) 1208 240.1 4.2e-63
NP_550434 (OMIM: 108361) asialoglycoprotein recept ( 311) 1208 240.1 4.2e-63
NP_001172 (OMIM: 108361) asialoglycoprotein recept ( 311) 1208 240.1 4.2e-63
XP_016880141 (OMIM: 108361) PREDICTED: asialoglyco ( 311) 1208 240.1 4.2e-63
XP_006721587 (OMIM: 108361) PREDICTED: asialoglyco ( 248) 1060 211.7 1.2e-54
XP_011522167 (OMIM: 108361) PREDICTED: asialoglyco ( 299) 1060 211.8 1.3e-54
XP_011522165 (OMIM: 108361) PREDICTED: asialoglyco ( 299) 1060 211.8 1.3e-54
XP_011522168 (OMIM: 108361) PREDICTED: asialoglyco ( 299) 1060 211.8 1.3e-54
XP_011522166 (OMIM: 108361) PREDICTED: asialoglyco ( 318) 1055 210.8 2.7e-54
XP_011522164 (OMIM: 108361) PREDICTED: asialoglyco ( 410) 1055 211.0 3.2e-54
NP_878910 (OMIM: 605999) C-type lectin domain fami ( 316) 918 184.7 2e-46
XP_011521915 (OMIM: 605999) PREDICTED: C-type lect ( 319) 917 184.5 2.3e-46
XP_011521916 (OMIM: 605999) PREDICTED: C-type lect ( 319) 917 184.5 2.3e-46
XP_011521917 (OMIM: 605999) PREDICTED: C-type lect ( 315) 887 178.8 1.2e-44
NP_001138367 (OMIM: 604672,607948,609423,614371) C ( 312) 391 84.0 3.9e-16
XP_016882280 (OMIM: 616838) PREDICTED: C-type lect ( 243) 380 81.8 1.4e-15
XP_016882279 (OMIM: 616838) PREDICTED: C-type lect ( 293) 379 81.7 1.8e-15
XP_016882276 (OMIM: 616838) PREDICTED: C-type lect ( 310) 379 81.7 1.9e-15
XP_016882277 (OMIM: 616838) PREDICTED: C-type lect ( 310) 379 81.7 1.9e-15
XP_016882278 (OMIM: 616838) PREDICTED: C-type lect ( 310) 379 81.7 1.9e-15
XP_016882275 (OMIM: 616838) PREDICTED: C-type lect ( 310) 379 81.7 1.9e-15
XP_016882274 (OMIM: 616838) PREDICTED: C-type lect ( 310) 379 81.7 1.9e-15
NP_001191047 (OMIM: 616838) C-type lectin domain f ( 378) 379 81.8 2.2e-15
XP_011524043 (OMIM: 607621) PREDICTED: collectin-1 ( 725) 379 82.1 3.5e-15
NP_569057 (OMIM: 607621) collectin-12 [Homo sapien ( 742) 379 82.1 3.6e-15
XP_005272529 (OMIM: 604672,607948,609423,614371) P ( 266) 370 80.0 5.6e-15
NP_001138379 (OMIM: 605872) C-type lectin domain f ( 332) 366 79.3 1.1e-14
NP_001138365 (OMIM: 604672,607948,609423,614371) C ( 268) 364 78.8 1.3e-14
NP_001138366 (OMIM: 604672,607948,609423,614371) C ( 360) 363 78.7 1.8e-14
NP_001138368 (OMIM: 604672,607948,609423,614371) C ( 380) 363 78.8 1.8e-14
NP_001193948 (OMIM: 151445) low affinity immunoglo ( 320) 362 78.5 1.9e-14
NP_001993 (OMIM: 151445) low affinity immunoglobul ( 321) 362 78.5 1.9e-14
XP_005272519 (OMIM: 151445) PREDICTED: low affinit ( 321) 362 78.5 1.9e-14
NP_001207429 (OMIM: 151445) low affinity immunoglo ( 321) 362 78.5 1.9e-14
NP_066978 (OMIM: 604672,607948,609423,614371) CD20 ( 404) 363 78.8 1.9e-14
NP_001138371 (OMIM: 604672,607948,609423,614371) C ( 243) 360 78.0 2e-14
NP_001138378 (OMIM: 605872) C-type lectin domain f ( 263) 358 77.7 2.7e-14
NP_001138381 (OMIM: 605872) C-type lectin domain f ( 353) 359 78.0 3e-14
XP_006722677 (OMIM: 605872) PREDICTED: C-type lect ( 343) 357 77.6 3.8e-14
>>NP_001662 (OMIM: 108360) asialoglycoprotein receptor 1 (291 aa)
initn: 2082 init1: 2082 opt: 2082 Z-score: 2156.3 bits: 406.9 E(85289): 2.3e-113
Smith-Waterman score: 2082; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)
10 20 30 40 50 60
pF1KB6 MTKEYQDLQHLDNEESDHHQLRKGPPPPQPLLQRLCSGPRLLLLSLGLSLLLLVVVCVIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTKEYQDLQHLDNEESDHHQLRKGPPPPQPLLQRLCSGPRLLLLSLGLSLLLLVVVCVIG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SQNSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQNSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SSLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAWADADN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAWADADN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 YCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQ
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 PDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL
250 260 270 280 290
>>XP_011522163 (OMIM: 108360) PREDICTED: asialoglycoprot (291 aa)
initn: 2082 init1: 2082 opt: 2082 Z-score: 2156.3 bits: 406.9 E(85289): 2.3e-113
Smith-Waterman score: 2082; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)
10 20 30 40 50 60
pF1KB6 MTKEYQDLQHLDNEESDHHQLRKGPPPPQPLLQRLCSGPRLLLLSLGLSLLLLVVVCVIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTKEYQDLQHLDNEESDHHQLRKGPPPPQPLLQRLCSGPRLLLLSLGLSLLLLVVVCVIG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SQNSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQNSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SSLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAWADADN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAWADADN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 YCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQ
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 PDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL
250 260 270 280 290
>>NP_001184145 (OMIM: 108360) asialoglycoprotein recepto (252 aa)
initn: 1657 init1: 1657 opt: 1657 Z-score: 1718.5 bits: 325.7 E(85289): 5.6e-89
Smith-Waterman score: 1726; 86.3% identity (86.6% similar) in 291 aa overlap (1-291:1-252)
10 20 30 40 50 60
pF1KB6 MTKEYQDLQHLDNEESDHHQLRKGPPPPQPLLQRLCSGPRLLLLSLGLSLLLLVVVCVIG
:::::::::::::::::::::::
NP_001 MTKEYQDLQHLDNEESDHHQLRK-------------------------------------
10 20
70 80 90 100 110 120
pF1KB6 SQNSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDH
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --DSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDH
30 40 50 60 70 80
130 140 150 160 170 180
pF1KB6 SSLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAWADADN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAWADADN
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB6 YCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQ
150 160 170 180 190 200
250 260 270 280 290
pF1KB6 PDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL
210 220 230 240 250
>>NP_550435 (OMIM: 108361) asialoglycoprotein receptor 2 (287 aa)
initn: 1240 init1: 1240 opt: 1293 Z-score: 1342.1 bits: 256.3 E(85289): 5.1e-68
Smith-Waterman score: 1293; 61.2% identity (86.7% similar) in 278 aa overlap (1-278:1-277)
10 20 30 40 50 60
pF1KB6 MTKEYQDLQHLDNEESDHHQLRKGPPPPQPLLQRLCSGPRLLLLSLGLSLLLLVVVCVIG
:.:..::.:.:..::.:: ...:::: ::: ::::: . ::.:....:::::.:: :
NP_550 MAKDFQDIQQLSSEENDH-PFHQGPPPAQPLAQRLCSMVCFSLLALSFNILLLVVICVTG
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 SQNSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDH
::..::: :::.:.:.::::..:: ..:...::.::.:: :. :: ..:::::.::. ::
NP_550 SQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKITSLGAKLEKQQQDLKADH
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 SSLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAWADADN
..::.:.:.: ::: ..::: :..:::.:::::::::::. ::::::.::::::.:..
NP_550 DALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQGSCYWFSHSGKAWAEAEK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 YCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQ
::.::.:::::..:::::::. .: .: :::.:: :..: :::::::::. ..::: :
NP_550 YCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWKWVDGTDYRHNYKNWAVTQ
180 190 200 210 220 230
250 260 270 280 290
pF1KB6 PDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL
::.:.:: :::.:::.. ::::::: : . ::::::
NP_550 PDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRNATGEVA
240 250 260 270 280
>>XP_006721589 (OMIM: 108361) PREDICTED: asialoglycoprot (287 aa)
initn: 1240 init1: 1240 opt: 1293 Z-score: 1342.1 bits: 256.3 E(85289): 5.1e-68
Smith-Waterman score: 1293; 61.2% identity (86.7% similar) in 278 aa overlap (1-278:1-277)
10 20 30 40 50 60
pF1KB6 MTKEYQDLQHLDNEESDHHQLRKGPPPPQPLLQRLCSGPRLLLLSLGLSLLLLVVVCVIG
:.:..::.:.:..::.:: ...:::: ::: ::::: . ::.:....:::::.:: :
XP_006 MAKDFQDIQQLSSEENDH-PFHQGPPPAQPLAQRLCSMVCFSLLALSFNILLLVVICVTG
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 SQNSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDH
::..::: :::.:.:.::::..:: ..:...::.::.:: :. :: ..:::::.::. ::
XP_006 SQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKITSLGAKLEKQQQDLKADH
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 SSLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAWADADN
..::.:.:.: ::: ..::: :..:::.:::::::::::. ::::::.::::::.:..
XP_006 DALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQGSCYWFSHSGKAWAEAEK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 YCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQ
::.::.:::::..:::::::. .: .: :::.:: :..: :::::::::. ..::: :
XP_006 YCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWKWVDGTDYRHNYKNWAVTQ
180 190 200 210 220 230
250 260 270 280 290
pF1KB6 PDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL
::.:.:: :::.:::.. ::::::: : . ::::::
XP_006 PDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRNATGEVA
240 250 260 270 280
>>XP_005256705 (OMIM: 108361) PREDICTED: asialoglycoprot (287 aa)
initn: 1240 init1: 1240 opt: 1293 Z-score: 1342.1 bits: 256.3 E(85289): 5.1e-68
Smith-Waterman score: 1293; 61.2% identity (86.7% similar) in 278 aa overlap (1-278:1-277)
10 20 30 40 50 60
pF1KB6 MTKEYQDLQHLDNEESDHHQLRKGPPPPQPLLQRLCSGPRLLLLSLGLSLLLLVVVCVIG
:.:..::.:.:..::.:: ...:::: ::: ::::: . ::.:....:::::.:: :
XP_005 MAKDFQDIQQLSSEENDH-PFHQGPPPAQPLAQRLCSMVCFSLLALSFNILLLVVICVTG
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 SQNSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDH
::..::: :::.:.:.::::..:: ..:...::.::.:: :. :: ..:::::.::. ::
XP_005 SQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKITSLGAKLEKQQQDLKADH
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 SSLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAWADADN
..::.:.:.: ::: ..::: :..:::.:::::::::::. ::::::.::::::.:..
XP_005 DALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQGSCYWFSHSGKAWAEAEK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 YCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPEQ
::.::.:::::..:::::::. .: .: :::.:: :..: :::::::::. ..::: :
XP_005 YCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWKWVDGTDYRHNYKNWAVTQ
180 190 200 210 220 230
250 260 270 280 290
pF1KB6 PDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL
::.:.:: :::.:::.. ::::::: : . ::::::
XP_005 PDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRNATGEVA
240 250 260 270 280
>>NP_550436 (OMIM: 108361) asialoglycoprotein receptor 2 (292 aa)
initn: 1160 init1: 1061 opt: 1273 Z-score: 1321.3 bits: 252.4 E(85289): 7.4e-67
Smith-Waterman score: 1273; 60.1% identity (85.2% similar) in 283 aa overlap (1-278:1-282)
10 20 30 40 50 60
pF1KB6 MTKEYQDLQHLDNEESDHHQLRKGPPPPQPLLQRLCSGPRLLLLSLGLSLLLLVVVCVIG
:.:..::.:.:..::.:: ...:::: ::: ::::: . ::.:....:::::.:: :
NP_550 MAKDFQDIQQLSSEENDH-PFHQGPPPAQPLAQRLCSMVCFSLLALSFNILLLVVICVTG
10 20 30 40 50
70 80 90 100 110
pF1KB6 SQN-----SQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKD
::. .::: :::.:.:.::::..:: ..:...::.::.:: :. :: ..:::::.:
NP_550 SQSEGHRGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKITSLGAKLEKQQQD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 LSEDHSSLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAW
:. ::..::.:.:.: ::: ..::: :..:::.:::::::::::. ::::::.:::::
NP_550 LKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQGSCYWFSHSGKAW
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 ADADNYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKN
:.:..::.::.:::::..:::::::. .: .: :::.:: :..: :::::::::. ..::
NP_550 AEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWKWVDGTDYRHNYKN
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 WRPEQPDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL
: :::.:.:: :::.:::.. ::::::: : . ::::::
NP_550 WAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRNATGEVA
240 250 260 270 280 290
>>XP_016880140 (OMIM: 108361) PREDICTED: asialoglycoprot (292 aa)
initn: 1157 init1: 1058 opt: 1273 Z-score: 1321.3 bits: 252.4 E(85289): 7.4e-67
Smith-Waterman score: 1273; 60.1% identity (85.2% similar) in 283 aa overlap (1-278:1-282)
10 20 30 40 50 60
pF1KB6 MTKEYQDLQHLDNEESDHHQLRKGPPPPQPLLQRLCSGPRLLLLSLGLSLLLLVVVCVIG
:.:..::.:.:..::.:: ...:::: ::: ::::: . ::.:....:::::.:: :
XP_016 MAKDFQDIQQLSSEENDH-PFHQGPPPAQPLAQRLCSMVCFSLLALSFNILLLVVICVTG
10 20 30 40 50
70 80 90 100 110
pF1KB6 SQN-----SQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKD
::. .::: :::.:.:.::::..:: ..:...::.::.:: :. :: ..:::::.:
XP_016 SQSEGHGGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKITSLGAKLEKQQQD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 LSEDHSSLLLHVKQFVSDLRSLSCQMAALQGNGSERTCCPVNWVEHERSCYWFSRSGKAW
:. ::..::.:.:.: ::: ..::: :..:::.:::::::::::. ::::::.:::::
XP_016 LKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQGSCYWFSHSGKAW
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 ADADNYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKN
:.:..::.::.:::::..:::::::. .: .: :::.:: :..: :::::::::. ..::
XP_016 AEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWKWVDGTDYRHNYKN
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 WRPEQPDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL
: :::.:.:: :::.:::.. ::::::: : . ::::::
XP_016 WAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRNATGEVA
240 250 260 270 280 290
>>NP_001316999 (OMIM: 605999) C-type lectin domain famil (289 aa)
initn: 808 init1: 808 opt: 1251 Z-score: 1298.7 bits: 248.2 E(85289): 1.3e-65
Smith-Waterman score: 1251; 58.7% identity (85.4% similar) in 288 aa overlap (1-287:1-287)
10 20 30 40 50 60
pF1KB6 MTKEYQDLQHLDNEESDHHQLRKGPPPPQPLLQRLCSGPRLLLLSLGLSLLLLVVVCVIG
::. :...:.:.:. . . ...:: : : ::::::::: :::::::.:::::..::.:
NP_001 MTRTYENFQYLENKVKVQG-FKNGPLPLQSLLQRLCSGPCHLLLSLGLGLLLLVIICVVG
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 SQNSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDH
:::..:..: :: :::::..: :....:..::... . . ::....: ... . :
NP_001 FQNSKFQRDLVTLRTDFSNFTSNTVAEIQALTSQGSSLEETIASLKAEVEGFKQERQAVH
60 70 80 90 100 110
130 140 150 160 170
pF1KB6 SSLLLHVKQFVSDLRSLSCQMAALQGNGS-ERTCCPVNWVEHERSCYWFSRSGKAWADAD
: .::.:.:.:.::..:.::.:.:..:.: : ::::::::::. ::::::.:: .::.:.
NP_001 SEMLLRVQQLVQDLKKLTCQVATLNNNASTEGTCCPVNWVEHQDSCYWFSHSGMSWAEAE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 NYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNWRPE
.::.:..:::::..: :::.:::...: . ::::: : .: ::::::::: :::.::.:
NP_001 KYCQLKNAHLVVINSREEQNFVQKYLGSAYTWMGLSDPEGAWKWVDGTDYATGFQNWKPG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 QPDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL
::::: ::::::::::::: :::::::::::::.::::. : ..:::
NP_001 QPDDWQGHGLGGGEDCAHFHPDGRWNDDVCQRPYHWVCEAGLGQTSQESH
240 250 260 270 280
>>NP_006335 (OMIM: 605999) C-type lectin domain family 1 (292 aa)
initn: 1258 init1: 808 opt: 1250 Z-score: 1297.6 bits: 248.1 E(85289): 1.5e-65
Smith-Waterman score: 1250; 58.1% identity (84.5% similar) in 291 aa overlap (1-287:1-290)
10 20 30 40 50 60
pF1KB6 MTKEYQDLQHLDNEESDHHQLRKGPPPPQPLLQRLCSGPRLLLLSLGLSLLLLVVVCVIG
::. :...:.:.:. . . ...:: : : ::::::::: :::::::.:::::..::.:
NP_006 MTRTYENFQYLENKVKVQG-FKNGPLPLQSLLQRLCSGPCHLLLSLGLGLLLLVIICVVG
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 SQNSQLQEELRGLRETFSNFTASTEAQVKGLSTQGGNVGRKMKSLESQLEKQQKDLSEDH
:::..:..: :: :::::..: :....:..::... . . ::....: ... . :
NP_006 FQNSKFQRDLVTLRTDFSNFTSNTVAEIQALTSQGSSLEETIASLKAEVEGFKQERQAVH
60 70 80 90 100 110
130 140 150 160 170
pF1KB6 SSLLLHVKQFVSDLRSLSCQMAALQGNG----SERTCCPVNWVEHERSCYWFSRSGKAWA
: .::.:.:.:.::..:.::.:.:..:: .: ::::::::::. ::::::.:: .::
NP_006 SEMLLRVQQLVQDLKKLTCQVATLNNNGEEASTEGTCCPVNWVEHQDSCYWFSHSGMSWA
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 DADNYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTWMGLHDQNGPWKWVDGTDYETGFKNW
.:..::.:..:::::..: :::.:::...: . ::::: : .: ::::::::: :::.::
NP_006 EAEKYCQLKNAHLVVINSREEQNFVQKYLGSAYTWMGLSDPEGAWKWVDGTDYATGFQNW
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 RPEQPDDWYGHGLGGGEDCAHFTDDGRWNDDVCQRPYRWVCETELDKASQEPPLL
.: ::::: ::::::::::::: :::::::::::::.::::. : ..:::
NP_006 KPGQPDDWQGHGLGGGEDCAHFHPDGRWNDDVCQRPYHWVCEAGLGQTSQESH
240 250 260 270 280 290
291 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:01:56 2016 done: Sat Nov 5 11:01:57 2016
Total Scan time: 8.240 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]