FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9666, 1186 aa 1>>>pF1KE9666 1186 - 1186 aa - 1186 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.4265+/-0.000413; mu= 8.1547+/- 0.026 mean_var=164.5943+/-34.219, 0's: 0 Z-trim(116.4): 21 B-trim: 413 in 1/51 Lambda= 0.099969 statistics sampled from 27461 (27479) to 27461 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.322), width: 16 Scan time: 18.160 The best scores are: opt bits E(85289) NP_000114 (OMIM: 133530,278780,616570) DNA repair (1186) 7706 1124.5 0 XP_005262670 (OMIM: 612449) PREDICTED: flap endonu ( 908) 325 59.9 8.4e-08 XP_011531124 (OMIM: 612449) PREDICTED: flap endonu ( 908) 325 59.9 8.4e-08 XP_006712068 (OMIM: 612449) PREDICTED: flap endonu ( 908) 325 59.9 8.4e-08 XP_011531123 (OMIM: 612449) PREDICTED: flap endonu ( 908) 325 59.9 8.4e-08 XP_011531122 (OMIM: 612449) PREDICTED: flap endonu ( 908) 325 59.9 8.4e-08 NP_001123481 (OMIM: 612449) flap endonuclease GEN ( 908) 325 59.9 8.4e-08 NP_872431 (OMIM: 612449) flap endonuclease GEN hom ( 908) 325 59.9 8.4e-08 NP_004102 (OMIM: 600393) flap endonuclease 1 [Homo ( 380) 242 47.8 0.00016 >>NP_000114 (OMIM: 133530,278780,616570) DNA repair prot (1186 aa) initn: 7706 init1: 7706 opt: 7706 Z-score: 6012.5 bits: 1124.5 E(85289): 0 Smith-Waterman score: 7706; 100.0% identity (100.0% similar) in 1186 aa overlap (1-1186:1-1186) 10 20 30 40 50 60 pF1KE9 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKLLKTFLKRQAIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 RLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTEKLLKTFLKRQAIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 TAFRSKRDEALPSLTQVRRENDLYVLPPLQEEEKHSSEEEDEKEWQERMNQKQALQEEFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 TAFRSKRDEALPSLTQVRRENDLYVLPPLQEEEKHSSEEEDEKEWQERMNQKQALQEEFF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 HNPQAIDIESEDFSSLPPEVKHEILTDMKEFTKRRRTLFEAMPEESDDFSQYQLKGLLKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 HNPQAIDIESEDFSSLPPEVKHEILTDMKEFTKRRRTLFEAMPEESDDFSQYQLKGLLKK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 NYLNQHIEHVQKEMNQQHSGHIRRQYEDEGGFLKEVESRRVVSEDTSHYILIKGIQAKTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 NYLNQHIEHVQKEMNQQHSGHIRRQYEDEGGFLKEVESRRVVSEDTSHYILIKGIQAKTV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE9 AEVDSESLPSSSKMHGMSFDVKSSPCEKLKTEKEPDATPPSPRTLLAMQAALLGSSSEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 AEVDSESLPSSSKMHGMSFDVKSSPCEKLKTEKEPDATPPSPRTLLAMQAALLGSSSEEE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE9 LESENRRQARGRNAPAAVDEGSISPRTLSAIKRALDDDEDVKVCAGDDVQTGGPGAEEMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LESENRRQARGRNAPAAVDEGSISPRTLSAIKRALDDDEDVKVCAGDDVQTGGPGAEEMR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE9 INSSTENSDEGLKVRDGKGIPFTATLASSSVNSAEEHVASTNEGREPTDSVPKEQMSLVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 INSSTENSDEGLKVRDGKGIPFTATLASSSVNSAEEHVASTNEGREPTDSVPKEQMSLVH 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE9 VGTEAFPISDESMIKDRKDRLPLESAVVRHSDAPGLPNGRELTPASPTCTNSVSKNETHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 VGTEAFPISDESMIKDRKDRLPLESAVVRHSDAPGLPNGRELTPASPTCTNSVSKNETHA 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE9 EVLEQQNELCPYESKFDSSLLSSDDETKCKPNSASEVIGPVSLQETSSIVSVPSEAVDNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 EVLEQQNELCPYESKFDSSLLSSDDETKCKPNSASEVIGPVSLQETSSIVSVPSEAVDNV 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE9 ENVVSFNAKEHENFLETIQEQQTTESAGQDLISIPKAVEPMEIDSEESESDGSFIEVQSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 ENVVSFNAKEHENFLETIQEQQTTESAGQDLISIPKAVEPMEIDSEESESDGSFIEVQSV 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE9 ISDEELQAEFPETSKPPSEQGEEELVGTREGEAPAESESLLRDNSERDDVDGEPQEAEKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 ISDEELQAEFPETSKPPSEQGEEELVGTREGEAPAESESLLRDNSERDDVDGEPQEAEKD 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE9 AEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERIAATVTGQMFLESQELLRLFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 AEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERIAATVTGQMFLESQELLRLFG 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE9 IPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYYQYVDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 IPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYYQYVDF 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE9 HNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLKFSEWWHEAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 HNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPLLKFSEWWHEAQ 850 860 870 880 890 900 910 920 930 940 950 960 pF1KE9 KNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 KNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSKGSFLWGKPDLDKIRE 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KE9 FCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLAQQEKEDAKRIKSQRLNRAVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 FCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLAQQEKEDAKRIKSQRLNRAVT 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KE9 CMLRKEKEAAASEIEAVSVAMEKEFELLDKAKRKTQKRGITNTLEESSSLKRKRLSDSKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 CMLRKEKEAAASEIEAVSVAMEKEFELLDKAKRKTQKRGITNTLEESSSLKRKRLSDSKR 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 pF1KE9 KNTCGGFLGETCLSESSDGSSSEDAESSSLMNVQRRTAAKEPKTSASDSQNSVKEAPVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 KNTCGGFLGETCLSESSDGSSSEDAESSSLMNVQRRTAAKEPKTSASDSQNSVKEAPVKN 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 pF1KE9 GGATTSSSSDSDDDGGKEKMVLVTARSVFGKKRRKLRRARGRKRKT :::::::::::::::::::::::::::::::::::::::::::::: NP_000 GGATTSSSSDSDDDGGKEKMVLVTARSVFGKKRRKLRRARGRKRKT 1150 1160 1170 1180 >>XP_005262670 (OMIM: 612449) PREDICTED: flap endonuclea (908 aa) initn: 399 init1: 179 opt: 325 Z-score: 261.1 bits: 59.9 E(85289): 8.4e-08 Smith-Waterman score: 325; 32.8% identity (67.7% similar) in 198 aa overlap (739-928:81-270) 710 720 730 740 750 760 pF1KE9 DVDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLK---AQKQQQERIAATVT :........:. . . :. ... . . XP_005 PHLRNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQKTGRSHF 60 70 80 90 100 110 770 780 790 800 810 820 pF1KE9 GQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNF ... : ..:. .:::..:: ::::.:: :. ...: .:.:.: .:.::. ::::: XP_005 KSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNF 120 130 140 150 160 170 830 840 850 860 870 880 pF1KE9 F--NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEFP .:. :. : . .....:::::. :..:: ::: :: .:.: :: :..... . XP_005 TMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILK 180 190 200 210 220 230 890 900 910 920 930 940 pF1KE9 GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLT--PGFPNPAVAEAYLKPV :..: : .:..: .:.. : .:. : ::: .. :: : XP_005 GQSL--LQRFNRW-NETSCNS----SPQ-LLVTKKLAHCSVCSHPGSPKDHERNGCRLCK 240 250 260 270 280 950 960 970 980 990 1000 pF1KE9 VDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLA XP_005 SDKYCEPHDYEYCCPCEWHRTEHDRQLSEVENNIKKKACCCEGFPFHEVIQEFLLNKDKL 290 300 310 320 330 340 >>XP_011531124 (OMIM: 612449) PREDICTED: flap endonuclea (908 aa) initn: 399 init1: 179 opt: 325 Z-score: 261.1 bits: 59.9 E(85289): 8.4e-08 Smith-Waterman score: 325; 32.8% identity (67.7% similar) in 198 aa overlap (739-928:81-270) 710 720 730 740 750 760 pF1KE9 DVDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLK---AQKQQQERIAATVT :........:. . . :. ... . . XP_011 PHLRNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQKTGRSHF 60 70 80 90 100 110 770 780 790 800 810 820 pF1KE9 GQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNF ... : ..:. .:::..:: ::::.:: :. ...: .:.:.: .:.::. ::::: XP_011 KSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNF 120 130 140 150 160 170 830 840 850 860 870 880 pF1KE9 F--NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEFP .:. :. : . .....:::::. :..:: ::: :: .:.: :: :..... . XP_011 TMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILK 180 190 200 210 220 230 890 900 910 920 930 940 pF1KE9 GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLT--PGFPNPAVAEAYLKPV :..: : .:..: .:.. : .:. : ::: .. :: : XP_011 GQSL--LQRFNRW-NETSCNS----SPQ-LLVTKKLAHCSVCSHPGSPKDHERNGCRLCK 240 250 260 270 280 950 960 970 980 990 1000 pF1KE9 VDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLA XP_011 SDKYCEPHDYEYCCPCEWHRTEHDRQLSEVENNIKKKACCCEGFPFHEVIQEFLLNKDKL 290 300 310 320 330 340 >>XP_006712068 (OMIM: 612449) PREDICTED: flap endonuclea (908 aa) initn: 399 init1: 179 opt: 325 Z-score: 261.1 bits: 59.9 E(85289): 8.4e-08 Smith-Waterman score: 325; 32.8% identity (67.7% similar) in 198 aa overlap (739-928:81-270) 710 720 730 740 750 760 pF1KE9 DVDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLK---AQKQQQERIAATVT :........:. . . :. ... . . XP_006 PHLRNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQKTGRSHF 60 70 80 90 100 110 770 780 790 800 810 820 pF1KE9 GQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNF ... : ..:. .:::..:: ::::.:: :. ...: .:.:.: .:.::. ::::: XP_006 KSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNF 120 130 140 150 160 170 830 840 850 860 870 880 pF1KE9 F--NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEFP .:. :. : . .....:::::. :..:: ::: :: .:.: :: :..... . XP_006 TMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILK 180 190 200 210 220 230 890 900 910 920 930 940 pF1KE9 GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLT--PGFPNPAVAEAYLKPV :..: : .:..: .:.. : .:. : ::: .. :: : XP_006 GQSL--LQRFNRW-NETSCNS----SPQ-LLVTKKLAHCSVCSHPGSPKDHERNGCRLCK 240 250 260 270 280 950 960 970 980 990 1000 pF1KE9 VDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLA XP_006 SDKYCEPHDYEYCCPCEWHRTEHDRQLSEVENNIKKKACCCEGFPFHEVIQEFLLNKDKL 290 300 310 320 330 340 >>XP_011531123 (OMIM: 612449) PREDICTED: flap endonuclea (908 aa) initn: 399 init1: 179 opt: 325 Z-score: 261.1 bits: 59.9 E(85289): 8.4e-08 Smith-Waterman score: 325; 32.8% identity (67.7% similar) in 198 aa overlap (739-928:81-270) 710 720 730 740 750 760 pF1KE9 DVDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLK---AQKQQQERIAATVT :........:. . . :. ... . . XP_011 PHLRNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQKTGRSHF 60 70 80 90 100 110 770 780 790 800 810 820 pF1KE9 GQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNF ... : ..:. .:::..:: ::::.:: :. ...: .:.:.: .:.::. ::::: XP_011 KSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNF 120 130 140 150 160 170 830 840 850 860 870 880 pF1KE9 F--NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEFP .:. :. : . .....:::::. :..:: ::: :: .:.: :: :..... . XP_011 TMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILK 180 190 200 210 220 230 890 900 910 920 930 940 pF1KE9 GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLT--PGFPNPAVAEAYLKPV :..: : .:..: .:.. : .:. : ::: .. :: : XP_011 GQSL--LQRFNRW-NETSCNS----SPQ-LLVTKKLAHCSVCSHPGSPKDHERNGCRLCK 240 250 260 270 280 950 960 970 980 990 1000 pF1KE9 VDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLA XP_011 SDKYCEPHDYEYCCPCEWHRTEHDRQLSEVENNIKKKACCCEGFPFHEVIQEFLLNKDKL 290 300 310 320 330 340 >>XP_011531122 (OMIM: 612449) PREDICTED: flap endonuclea (908 aa) initn: 399 init1: 179 opt: 325 Z-score: 261.1 bits: 59.9 E(85289): 8.4e-08 Smith-Waterman score: 325; 32.8% identity (67.7% similar) in 198 aa overlap (739-928:81-270) 710 720 730 740 750 760 pF1KE9 DVDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLK---AQKQQQERIAATVT :........:. . . :. ... . . XP_011 PHLRNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQKTGRSHF 60 70 80 90 100 110 770 780 790 800 810 820 pF1KE9 GQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNF ... : ..:. .:::..:: ::::.:: :. ...: .:.:.: .:.::. ::::: XP_011 KSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNF 120 130 140 150 160 170 830 840 850 860 870 880 pF1KE9 F--NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEFP .:. :. : . .....:::::. :..:: ::: :: .:.: :: :..... . XP_011 TMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILK 180 190 200 210 220 230 890 900 910 920 930 940 pF1KE9 GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLT--PGFPNPAVAEAYLKPV :..: : .:..: .:.. : .:. : ::: .. :: : XP_011 GQSL--LQRFNRW-NETSCNS----SPQ-LLVTKKLAHCSVCSHPGSPKDHERNGCRLCK 240 250 260 270 280 950 960 970 980 990 1000 pF1KE9 VDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLA XP_011 SDKYCEPHDYEYCCPCEWHRTEHDRQLSEVENNIKKKACCCEGFPFHEVIQEFLLNKDKL 290 300 310 320 330 340 >>NP_001123481 (OMIM: 612449) flap endonuclease GEN homo (908 aa) initn: 399 init1: 179 opt: 325 Z-score: 261.1 bits: 59.9 E(85289): 8.4e-08 Smith-Waterman score: 325; 32.8% identity (67.7% similar) in 198 aa overlap (739-928:81-270) 710 720 730 740 750 760 pF1KE9 DVDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLK---AQKQQQERIAATVT :........:. . . :. ... . . NP_001 PHLRNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQKTGRSHF 60 70 80 90 100 110 770 780 790 800 810 820 pF1KE9 GQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNF ... : ..:. .:::..:: ::::.:: :. ...: .:.:.: .:.::. ::::: NP_001 KSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNF 120 130 140 150 160 170 830 840 850 860 870 880 pF1KE9 F--NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEFP .:. :. : . .....:::::. :..:: ::: :: .:.: :: :..... . NP_001 TMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILK 180 190 200 210 220 230 890 900 910 920 930 940 pF1KE9 GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLT--PGFPNPAVAEAYLKPV :..: : .:..: .:.. : .:. : ::: .. :: : NP_001 GQSL--LQRFNRW-NETSCNS----SPQ-LLVTKKLAHCSVCSHPGSPKDHERNGCRLCK 240 250 260 270 280 950 960 970 980 990 1000 pF1KE9 VDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLA NP_001 SDKYCEPHDYEYCCPCEWHRTEHDRQLNEVENNIKKKACCCEGFPFHEVIQEFLLNKDKL 290 300 310 320 330 340 >>NP_872431 (OMIM: 612449) flap endonuclease GEN homolog (908 aa) initn: 399 init1: 179 opt: 325 Z-score: 261.1 bits: 59.9 E(85289): 8.4e-08 Smith-Waterman score: 325; 32.8% identity (67.7% similar) in 198 aa overlap (739-928:81-270) 710 720 730 740 750 760 pF1KE9 DVDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLK---AQKQQQERIAATVT :........:. . . :. ... . . NP_872 PHLRNLFFRISYLTQMDVKLVFVMEGEPPKLKADVISKRNQSRYGSSGKSWSQKTGRSHF 60 70 80 90 100 110 770 780 790 800 810 820 pF1KE9 GQMFLESQELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNF ... : ..:. .:::..:: ::::.:: :. ...: .:.:.: .:.::. ::::: NP_872 KSVLRECLHMLECLGIPWVQAAGEAEAMCAYLNAGGHVDGCLTNDGDTFLYGAQTVYRNF 120 130 140 150 160 170 830 840 850 860 870 880 pF1KE9 F--NKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYT-EGIPTVGCVTAMEILNEFP .:. :. : . .....:::::. :..:: ::: :: .:.: :: :..... . NP_872 TMNTKDPHVDCYTMSSIKSKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALKLIQILK 180 190 200 210 220 230 890 900 910 920 930 940 pF1KE9 GHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLT--PGFPNPAVAEAYLKPV :..: : .:..: .:.. : .:. : ::: .. :: : NP_872 GQSL--LQRFNRW-NETSCNS----SPQ-LLVTKKLAHCSVCSHPGSPKDHERNGCRLCK 240 250 260 270 280 950 960 970 980 990 1000 pF1KE9 VDDSKGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLA NP_872 SDKYCEPHDYEYCCPCEWHRTEHDRQLNEVENNIKKKACCCEGFPFHEVIQEFLLNKDKL 290 300 310 320 330 340 >>NP_004102 (OMIM: 600393) flap endonuclease 1 [Homo sap (380 aa) initn: 388 init1: 143 opt: 242 Z-score: 202.1 bits: 47.8 E(85289): 0.00016 Smith-Waterman score: 272; 26.8% identity (59.9% similar) in 272 aa overlap (746-1009:112-355) 720 730 740 750 760 770 pF1KE9 EAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERIA---ATVTGQMFLES :: . . .:. :... . :: : : NP_004 VYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDEC 90 100 110 120 130 140 780 790 800 810 820 pF1KE9 QELLRLFGIPYIQAPMEAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFN---KN ..:: :.::::..:: ::::.:: : . .. .. :.: : ::. ..:.. :. NP_004 KHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKK 150 160 170 180 190 200 830 840 850 860 870 880 pF1KE9 KFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGHGLEPL .. .. . ..:::.......: :::::: :.: .: :...... ...: . NP_004 LPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKH--KSIEEI 210 220 230 240 250 890 900 910 920 930 940 pF1KE9 LKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQLTPGFPNPAVAEAYLKPVVDDSKGSFL .. . .:. : :.. ..:. . : : : .: .: :: NP_004 VR--------RLDPNKYPVPENW-LHKEAHQLFLEPEVLDPESVE--LK----------- 260 270 280 290 950 960 970 980 990 1000 pF1KE9 WGKPDLDKIREF-C-QRYFGWNRTKTDESLFPVLKQLDAQQTQLRIDSFFRLAQQEKEDA :..:. ... .: : .. :. .: .. . . .: .:: :.:.::... . . .: NP_004 WSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQ---GSTQGRLDDFFKVTGSLS-SA 300 310 320 330 340 350 1010 1020 1030 1040 1050 1060 pF1KE9 KRIKSQRLNRAVTCMLRKEKEAAASEIEAVSVAMEKEFELLDKAKRKTQKRGITNTLEES :: NP_004 KRKEPEPKGSTKKKAKTGAAGKFKRGK 360 370 380 1186 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:10:01 2016 done: Mon Nov 7 00:10:04 2016 Total Scan time: 18.160 Total Display time: 0.140 Function used was FASTA [36.3.4 Apr, 2011]