Result of FASTA (omim) for
pFN21AE3640
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3640, 822 aa
1>>>pF1KE3640 822 - 822 aa - 822 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5838+/-0.000452; mu= 11.1172+/- 0.028
mean_var=166.6954+/-33.446, 0's: 0 Z-trim(114.9): 129 B-trim: 0 in 0/56
Lambda= 0.099337
statistics sampled from 24959 (25089) to 24959 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.294), width: 16
Scan time: 9.140
The best scores are: opt bits E(85289)
XP_016883747 (OMIM: 604735) PREDICTED: ubiquitin c ( 822) 5464 796.1 0
XP_016883748 (OMIM: 604735) PREDICTED: ubiquitin c ( 822) 5464 796.1 0
NP_001001992 (OMIM: 604735) ubiquitin carboxyl-ter ( 822) 5464 796.1 0
XP_016883746 (OMIM: 604735) PREDICTED: ubiquitin c ( 823) 5452 794.4 0
NP_006438 (OMIM: 604735) ubiquitin carboxyl-termin ( 823) 5452 794.4 0
NP_001027582 (OMIM: 604735) ubiquitin carboxyl-ter ( 823) 5452 794.4 0
XP_016883750 (OMIM: 604735) PREDICTED: ubiquitin c ( 513) 3367 495.4 2.6e-139
XP_016883749 (OMIM: 604735) PREDICTED: ubiquitin c ( 513) 3367 495.4 2.6e-139
XP_016878252 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 346 62.5 5.4e-09
XP_016878254 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 346 62.5 5.4e-09
XP_016878253 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 346 62.5 5.4e-09
NP_006528 (OMIM: 604728) ubiquitin carboxyl-termin ( 520) 346 62.5 5.6e-09
NP_001243631 (OMIM: 604728) ubiquitin carboxyl-ter ( 476) 304 56.4 3.4e-07
XP_016878255 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 282 53.3 2.8e-06
XP_016878256 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 282 53.3 2.8e-06
XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin c ( 352) 253 49.0 4.3e-05
NP_001230688 (OMIM: 604725) ubiquitin carboxyl-ter ( 362) 253 49.0 4.4e-05
NP_741994 (OMIM: 604725) ubiquitin carboxyl-termin ( 396) 253 49.1 4.7e-05
XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 253 49.2 6.4e-05
NP_004196 (OMIM: 604725) ubiquitin carboxyl-termin ( 605) 253 49.2 6.4e-05
XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 253 49.2 6.4e-05
NP_001265322 (OMIM: 610993) ubiquitin carboxyl-ter ( 712) 253 49.3 7.3e-05
XP_016875499 (OMIM: 610993) PREDICTED: ubiquitin c ( 712) 253 49.3 7.3e-05
XP_016875498 (OMIM: 610993) PREDICTED: ubiquitin c ( 712) 253 49.3 7.3e-05
NP_115523 (OMIM: 610993) ubiquitin carboxyl-termin ( 712) 253 49.3 7.3e-05
XP_016875500 (OMIM: 610993) PREDICTED: ubiquitin c ( 712) 253 49.3 7.3e-05
NP_001035862 (OMIM: 610993) ubiquitin carboxyl-ter ( 712) 253 49.3 7.3e-05
XP_006719781 (OMIM: 604731) PREDICTED: ubiquitin c ( 775) 248 48.6 0.00013
XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 248 48.6 0.00014
XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 248 48.6 0.00014
NP_006304 (OMIM: 604731) ubiquitin carboxyl-termin ( 952) 248 48.7 0.00015
NP_001239007 (OMIM: 604731) ubiquitin carboxyl-ter ( 981) 248 48.7 0.00015
XP_005269318 (OMIM: 604731) PREDICTED: ubiquitin c ( 648) 240 47.4 0.00025
NP_955475 (OMIM: 603486) ubiquitin carboxyl-termin ( 916) 242 47.8 0.00026
NP_003354 (OMIM: 603486) ubiquitin carboxyl-termin ( 963) 242 47.8 0.00027
XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin c ( 341) 227 45.3 0.00055
NP_001273696 (OMIM: 612849) ubiquitin carboxyl-ter ( 354) 227 45.3 0.00057
NP_001127695 (OMIM: 612849) ubiquitin carboxyl-ter ( 359) 227 45.3 0.00058
NP_073743 (OMIM: 612849) ubiquitin carboxyl-termin ( 366) 227 45.3 0.00058
XP_011522361 (OMIM: 604334) PREDICTED: ubiquitin c ( 786) 231 46.2 0.0007
XP_011522360 (OMIM: 604334) PREDICTED: ubiquitin c (1031) 231 46.3 0.00086
XP_016880723 (OMIM: 607740) PREDICTED: ubiquitin c (1288) 232 46.5 0.00092
XP_011523681 (OMIM: 607740) PREDICTED: ubiquitin c (1327) 232 46.5 0.00094
XP_016880722 (OMIM: 607740) PREDICTED: ubiquitin c (1558) 232 46.6 0.0011
XP_011523680 (OMIM: 607740) PREDICTED: ubiquitin c (1572) 232 46.6 0.0011
XP_011522359 (OMIM: 604334) PREDICTED: ubiquitin c (1384) 231 46.4 0.0011
XP_011523678 (OMIM: 607740) PREDICTED: ubiquitin c (1601) 232 46.6 0.0011
NP_115971 (OMIM: 607740) ubiquitin carboxyl-termin (1604) 232 46.6 0.0011
NP_001291213 (OMIM: 604334) ubiquitin carboxyl-ter (1406) 231 46.4 0.0011
XP_011522354 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 231 46.4 0.0011
>>XP_016883747 (OMIM: 604735) PREDICTED: ubiquitin carbo (822 aa)
initn: 5464 init1: 5464 opt: 5464 Z-score: 4243.5 bits: 796.1 E(85289): 0
Smith-Waterman score: 5464; 99.6% identity (99.9% similar) in 822 aa overlap (1-822:1-822)
10 20 30 40 50 60
pF1KE3 MGKKRTKGKTVPIDDSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGKKRTKGKTVPIDDSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 AEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 NEVQYCSSNQLGQVVDYVRKHASITTPKPEKDNGNIELENKKLEKESKNEQEREKKENMA
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
XP_016 NEVQYCSSNQLGQVVDYVRKQASITTPKPEKDNGNIELENKKLEKESKNEQEREKKENMA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KENPPMNSPCQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KENPPMNSPCQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 ELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 ELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTVEDEDQDSEEEKDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTVEDEDQDSEEEKDN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 DSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDSDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_016 DSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDSEY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 EAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNIN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 MDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHTP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 GTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRRQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 CNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE3 LAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGDI
730 740 750 760 770 780
790 800 810 820
pF1KE3 PQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
::::::::::::::::::::::::::::::::::::::::::
XP_016 PQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
790 800 810 820
>>XP_016883748 (OMIM: 604735) PREDICTED: ubiquitin carbo (822 aa)
initn: 5464 init1: 5464 opt: 5464 Z-score: 4243.5 bits: 796.1 E(85289): 0
Smith-Waterman score: 5464; 99.6% identity (99.9% similar) in 822 aa overlap (1-822:1-822)
10 20 30 40 50 60
pF1KE3 MGKKRTKGKTVPIDDSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGKKRTKGKTVPIDDSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 AEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 NEVQYCSSNQLGQVVDYVRKHASITTPKPEKDNGNIELENKKLEKESKNEQEREKKENMA
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
XP_016 NEVQYCSSNQLGQVVDYVRKQASITTPKPEKDNGNIELENKKLEKESKNEQEREKKENMA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KENPPMNSPCQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KENPPMNSPCQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 ELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 ELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTVEDEDQDSEEEKDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTVEDEDQDSEEEKDN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 DSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDSDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_016 DSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDSEY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 EAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNIN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 MDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHTP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 GTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRRQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 CNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE3 LAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGDI
730 740 750 760 770 780
790 800 810 820
pF1KE3 PQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
::::::::::::::::::::::::::::::::::::::::::
XP_016 PQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
790 800 810 820
>>NP_001001992 (OMIM: 604735) ubiquitin carboxyl-termina (822 aa)
initn: 5464 init1: 5464 opt: 5464 Z-score: 4243.5 bits: 796.1 E(85289): 0
Smith-Waterman score: 5464; 99.6% identity (99.9% similar) in 822 aa overlap (1-822:1-822)
10 20 30 40 50 60
pF1KE3 MGKKRTKGKTVPIDDSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKKRTKGKTVPIDDSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 AEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 NEVQYCSSNQLGQVVDYVRKHASITTPKPEKDNGNIELENKKLEKESKNEQEREKKENMA
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
NP_001 NEVQYCSSNQLGQVVDYVRKQASITTPKPEKDNGNIELENKKLEKESKNEQEREKKENMA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KENPPMNSPCQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KENPPMNSPCQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 ELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 ELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTVEDEDQDSEEEKDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTVEDEDQDSEEEKDN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 DSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDSDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 DSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDSEY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 EAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNIN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 MDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHTP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 GTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRRQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 CNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE3 LAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGDI
730 740 750 760 770 780
790 800 810 820
pF1KE3 PQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
::::::::::::::::::::::::::::::::::::::::::
NP_001 PQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
790 800 810 820
>>XP_016883746 (OMIM: 604735) PREDICTED: ubiquitin carbo (823 aa)
initn: 4410 init1: 4410 opt: 5452 Z-score: 4234.2 bits: 794.4 E(85289): 0
Smith-Waterman score: 5452; 99.5% identity (99.8% similar) in 823 aa overlap (1-822:1-823)
10 20 30 40 50 60
pF1KE3 MGKKRTKGKTVPIDDSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGKKRTKGKTVPIDDSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 AEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCD
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 NEVQYCSSNQLGQVVDYVRKHASITTPKP-EKDNGNIELENKKLEKESKNEQEREKKENM
::::::::::::::::::::.:::::::: ::::::::::::::::::::::::::::::
XP_016 NEVQYCSSNQLGQVVDYVRKQASITTPKPAEKDNGNIELENKKLEKESKNEQEREKKENM
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 AKENPPMNSPCQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKENPPMNSPCQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPD
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE3 LALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDS
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 QELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE3 GELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTVEDEDQDSEEEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTVEDEDQDSEEEKD
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE3 NDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDSD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_016 NDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDSE
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE3 NEAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YEAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNI
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE3 NMDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NMDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHT
550 560 570 580 590 600
600 610 620 630 640 650
pF1KE3 PGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRR
610 620 630 640 650 660
660 670 680 690 700 710
pF1KE3 QCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEIL
670 680 690 700 710 720
720 730 740 750 760 770
pF1KE3 DLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGD
730 740 750 760 770 780
780 790 800 810 820
pF1KE3 IPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
:::::::::::::::::::::::::::::::::::::::::::
XP_016 IPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
790 800 810 820
>>NP_006438 (OMIM: 604735) ubiquitin carboxyl-terminal h (823 aa)
initn: 4410 init1: 4410 opt: 5452 Z-score: 4234.2 bits: 794.4 E(85289): 0
Smith-Waterman score: 5452; 99.5% identity (99.8% similar) in 823 aa overlap (1-822:1-823)
10 20 30 40 50 60
pF1KE3 MGKKRTKGKTVPIDDSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGKKRTKGKTVPIDDSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 AEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCD
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 NEVQYCSSNQLGQVVDYVRKHASITTPKP-EKDNGNIELENKKLEKESKNEQEREKKENM
::::::::::::::::::::.:::::::: ::::::::::::::::::::::::::::::
NP_006 NEVQYCSSNQLGQVVDYVRKQASITTPKPAEKDNGNIELENKKLEKESKNEQEREKKENM
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 AKENPPMNSPCQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AKENPPMNSPCQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPD
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE3 LALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDS
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 QELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE3 GELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTVEDEDQDSEEEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTVEDEDQDSEEEKD
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE3 NDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDSD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_006 NDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDSE
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE3 NEAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YEAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNI
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE3 NMDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NMDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHT
550 560 570 580 590 600
600 610 620 630 640 650
pF1KE3 PGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRR
610 620 630 640 650 660
660 670 680 690 700 710
pF1KE3 QCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEIL
670 680 690 700 710 720
720 730 740 750 760 770
pF1KE3 DLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGD
730 740 750 760 770 780
780 790 800 810 820
pF1KE3 IPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
:::::::::::::::::::::::::::::::::::::::::::
NP_006 IPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
790 800 810 820
>>NP_001027582 (OMIM: 604735) ubiquitin carboxyl-termina (823 aa)
initn: 4410 init1: 4410 opt: 5452 Z-score: 4234.2 bits: 794.4 E(85289): 0
Smith-Waterman score: 5452; 99.5% identity (99.8% similar) in 823 aa overlap (1-822:1-823)
10 20 30 40 50 60
pF1KE3 MGKKRTKGKTVPIDDSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKKRTKGKTVPIDDSSETLEPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 AEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCD
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 NEVQYCSSNQLGQVVDYVRKHASITTPKP-EKDNGNIELENKKLEKESKNEQEREKKENM
::::::::::::::::::::.:::::::: ::::::::::::::::::::::::::::::
NP_001 NEVQYCSSNQLGQVVDYVRKQASITTPKPAEKDNGNIELENKKLEKESKNEQEREKKENM
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 AKENPPMNSPCQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKENPPMNSPCQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPD
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE3 LALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LALTEPLEINLEPPGPLTLAMSQFLNEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDS
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 QELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE3 GELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTVEDEDQDSEEEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVNDKNLKKTVEDEDQDSEEEKD
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE3 NDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDSD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 NDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDICTIDHPEDSE
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE3 NEAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YEAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNI
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE3 NMDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NMDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLNLNAALHPDEINIEILNDSHT
550 560 570 580 590 600
600 610 620 630 640 650
pF1KE3 PGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQFTRNEKLRDANKLLCEVCTRR
610 620 630 640 650 660
660 670 680 690 700 710
pF1KE3 QCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEIL
670 680 690 700 710 720
720 730 740 750 760 770
pF1KE3 DLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANSHLSNLVLHGD
730 740 750 760 770 780
780 790 800 810 820
pF1KE3 IPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
:::::::::::::::::::::::::::::::::::::::::::
NP_001 IPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERIL
790 800 810 820
>>XP_016883750 (OMIM: 604735) PREDICTED: ubiquitin carbo (513 aa)
initn: 3367 init1: 3367 opt: 3367 Z-score: 2622.1 bits: 495.4 E(85289): 2.6e-139
Smith-Waterman score: 3367; 99.6% identity (99.8% similar) in 513 aa overlap (310-822:1-513)
280 290 300 310 320 330
pF1KE3 LFSQVCKKAVRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKN
::::::::::::::::::::::::::::::
XP_016 MRAEEHQRVSKGILKAFGNSTEKLDEELKN
10 20 30
340 350 360 370 380 390
pF1KE3 KVKDYEKKKSMPSFVDRIFGGELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KVKDYEKKKSMPSFVDRIFGGELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVN
40 50 60 70 80 90
400 410 420 430 440 450
pF1KE3 DKNLKKTVEDEDQDSEEEKDNDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKNLKKTVEDEDQDSEEEKDNDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKI
100 110 120 130 140 150
460 470 480 490 500 510
pF1KE3 QGKVLHLNDICTIDHPEDSDNEAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAK
:::::::::::::::::::. :::::::::::::::::::::::::::::::::::::::
XP_016 QGKVLHLNDICTIDHPEDSEYEAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAK
160 170 180 190 200 210
520 530 540 550 560 570
pF1KE3 MIESVTDNQKSTEEVDMKNINMDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MIESVTDNQKSTEEVDMKNINMDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLN
220 230 240 250 260 270
580 590 600 610 620 630
pF1KE3 LNAALHPDEINIEILNDSHTPGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNAALHPDEINIEILNDSHTPGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQF
280 290 300 310 320 330
640 650 660 670 680 690
pF1KE3 TRNEKLRDANKLLCEVCTRRQCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TRNEKLRDANKLLCEVCTRRQCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRF
340 350 360 370 380 390
700 710 720 730 740 750
pF1KE3 QQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYT
400 410 420 430 440 450
760 770 780 790 800 810
pF1KE3 AYAKARTANSHLSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYAKARTANSHLSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYE
460 470 480 490 500 510
820
pF1KE3 RIL
:::
XP_016 RIL
>>XP_016883749 (OMIM: 604735) PREDICTED: ubiquitin carbo (513 aa)
initn: 3367 init1: 3367 opt: 3367 Z-score: 2622.1 bits: 495.4 E(85289): 2.6e-139
Smith-Waterman score: 3367; 99.6% identity (99.8% similar) in 513 aa overlap (310-822:1-513)
280 290 300 310 320 330
pF1KE3 LFSQVCKKAVRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKN
::::::::::::::::::::::::::::::
XP_016 MRAEEHQRVSKGILKAFGNSTEKLDEELKN
10 20 30
340 350 360 370 380 390
pF1KE3 KVKDYEKKKSMPSFVDRIFGGELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KVKDYEKKKSMPSFVDRIFGGELTSMIMCDQCRTVSLVHESFLDLSLPVLDDQSGKKSVN
40 50 60 70 80 90
400 410 420 430 440 450
pF1KE3 DKNLKKTVEDEDQDSEEEKDNDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKNLKKTVEDEDQDSEEEKDNDSYIKERSDIPSGTSKHLQKKAKKQAKKQAKNQRRQQKI
100 110 120 130 140 150
460 470 480 490 500 510
pF1KE3 QGKVLHLNDICTIDHPEDSDNEAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAK
:::::::::::::::::::. :::::::::::::::::::::::::::::::::::::::
XP_016 QGKVLHLNDICTIDHPEDSEYEAEMSLQGEVNIKSNHISQEGVMHKEYCVNQKDLNGQAK
160 170 180 190 200 210
520 530 540 550 560 570
pF1KE3 MIESVTDNQKSTEEVDMKNINMDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MIESVTDNQKSTEEVDMKNINMDNDLEVLTSSPTRNLNGAYLTEGSNGEVDISNGFKNLN
220 230 240 250 260 270
580 590 600 610 620 630
pF1KE3 LNAALHPDEINIEILNDSHTPGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNAALHPDEINIEILNDSHTPGTKVYEVVNEDPETAFCTLANREVFNTDECSIQHCLYQF
280 290 300 310 320 330
640 650 660 670 680 690
pF1KE3 TRNEKLRDANKLLCEVCTRRQCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TRNEKLRDANKLLCEVCTRRQCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRF
340 350 360 370 380 390
700 710 720 730 740 750
pF1KE3 QQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYT
400 410 420 430 440 450
760 770 780 790 800 810
pF1KE3 AYAKARTANSHLSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYAKARTANSHLSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYE
460 470 480 490 500 510
820
pF1KE3 RIL
:::
XP_016 RIL
>>XP_016878252 (OMIM: 604728) PREDICTED: ubiquitin carbo (498 aa)
initn: 586 init1: 112 opt: 346 Z-score: 282.4 bits: 62.5 E(85289): 5.4e-09
Smith-Waterman score: 378; 26.9% identity (53.4% similar) in 464 aa overlap (70-504:15-449)
40 50 60 70 80 90
pF1KE3 LVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHY----
: :.:: :. ::: . :: :::
XP_016 MQSPPHLAVCRSNKSPWVCLTCSSVHCGRYVN-GHAKKHYEDAQ
10 20 30 40
100 110 120 130 140
pF1KE3 --LT--PRSEP-----HCLVLSLDNWSVWCYVCDNEVQYCSSNQLGQVVDYVRKHASITT
:: .:: : . .. ...:..:: ::. : ....:: .:. ::.: .
XP_016 VPLTNHKKSEKQDKVQHTVCMDCSSYSTYCYRCDDFV--VNDTKLG-LVQKVREHLQ---
50 60 70 80 90
150 160 170 180 190 200
pF1KE3 PKPEKDNGNIELENKKLEKESKNEQEREKKENMAKENPPMNSPCQITVKGLSNLGNTCFF
. .:. . . .: .: .: : . : : .. : . :: :::::::.
XP_016 ---NLENSAFTADRHKKRKLLENSTLNSK---LLKVNGSTTAIC---ATGLRNLGNTCFM
100 110 120 130 140
210 220 230 240 250 260
pF1KE3 NAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEINLEPPGPLTLA--MSQFL
::..:.::. . .::. :... : . . . . ..:. . . :
XP_016 NAILQSLSNIEQFCCYFKELPA----VELRNGKTAGRRTYHTRSQGDNNVSLVEEFRKTL
150 160 170 180 190 200
270 280 290 300 310 320
pF1KE3 NEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILK
. . .. . .:. :: : : :.::::::..:..::::: .. : .: ..
XP_016 CALWQGSQTAFSPESLFYVVWKIMPNFRGYQQQDAHEFMRYLLDHLHLEL-----QGGFN
210 220 230 240 250
330 340 350 360 370 380
pF1KE3 AFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFGGELTSMIMCDQCRTVSLVHESFLDL
. . :. :.:. .... .. . : :::: : . . : : : : . ::::
XP_016 GVSRSA-ILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNCLICGTESRKFDPFLDL
260 270 280 290 300 310
390 400 410 420 430
pF1KE3 SLPVLDDQSGKKSVNDKN-----LKKTVEDEDQDSEEEKDNDSYIKERSDIPSGTSKH--
:: . .. .:.: :..: :. ... : :: ... :. .. . ..:.
XP_016 SLDIPSQFRSKRSKNQENGPVCSLRDCLRSFT-DLEELDETELYMCHKCKKKQKSTKKFW
320 330 340 350 360 370
440 450 460 470 480 490
pF1KE3 LQKKAKK---QAKKQAKNQRRQQKIQGKV---LHLNDI-CTIDHPEDSDNEAEMSLQGEV
.:: : . :. . ..:.. : :. :. : . .::.: :. : .
XP_016 IQKLPKVLCLHLKRFHWTAYLRNKVDTYVEFPLRGLDMKCYLLEPENSGPES--CLYDLA
380 390 400 410 420 430
500 510 520 530 540 550
pF1KE3 NIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNINMDNDLEVLTS
. .: : : :
XP_016 AVVVHHGSGVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYILFYVEHQAKAGS
440 450 460 470 480 490
>>XP_016878254 (OMIM: 604728) PREDICTED: ubiquitin carbo (498 aa)
initn: 586 init1: 112 opt: 346 Z-score: 282.4 bits: 62.5 E(85289): 5.4e-09
Smith-Waterman score: 378; 26.9% identity (53.4% similar) in 464 aa overlap (70-504:15-449)
40 50 60 70 80 90
pF1KE3 LVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHY----
: :.:: :. ::: . :: :::
XP_016 MQSPPHLAVCRSNKSPWVCLTCSSVHCGRYVN-GHAKKHYEDAQ
10 20 30 40
100 110 120 130 140
pF1KE3 --LT--PRSEP-----HCLVLSLDNWSVWCYVCDNEVQYCSSNQLGQVVDYVRKHASITT
:: .:: : . .. ...:..:: ::. : ....:: .:. ::.: .
XP_016 VPLTNHKKSEKQDKVQHTVCMDCSSYSTYCYRCDDFV--VNDTKLG-LVQKVREHLQ---
50 60 70 80 90
150 160 170 180 190 200
pF1KE3 PKPEKDNGNIELENKKLEKESKNEQEREKKENMAKENPPMNSPCQITVKGLSNLGNTCFF
. .:. . . .: .: .: : . : : .. : . :: :::::::.
XP_016 ---NLENSAFTADRHKKRKLLENSTLNSK---LLKVNGSTTAIC---ATGLRNLGNTCFM
100 110 120 130 140
210 220 230 240 250 260
pF1KE3 NAVMQNLSQTPVLRELLKEVKMSGTIVKIEPPDLALTEPLEINLEPPGPLTLA--MSQFL
::..:.::. . .::. :... : . . . . ..:. . . :
XP_016 NAILQSLSNIEQFCCYFKELPA----VELRNGKTAGRRTYHTRSQGDNNVSLVEEFRKTL
150 160 170 180 190 200
270 280 290 300 310 320
pF1KE3 NEMQETKKGVVTPKELFSQVCKKAVRFKGYQQQDSQELLRYLLDGMRAEEHQRVSKGILK
. . .. . .:. :: : : :.::::::..:..::::: .. : .: ..
XP_016 CALWQGSQTAFSPESLFYVVWKIMPNFRGYQQQDAHEFMRYLLDHLHLEL-----QGGFN
210 220 230 240 250
330 340 350 360 370 380
pF1KE3 AFGNSTEKLDEELKNKVKDYEKKKSMPSFVDRIFGGELTSMIMCDQCRTVSLVHESFLDL
. . :. :.:. .... .. . : :::: : . . : : : : . ::::
XP_016 GVSRSA-ILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNCLICGTESRKFDPFLDL
260 270 280 290 300 310
390 400 410 420 430
pF1KE3 SLPVLDDQSGKKSVNDKN-----LKKTVEDEDQDSEEEKDNDSYIKERSDIPSGTSKH--
:: . .. .:.: :..: :. ... : :: ... :. .. . ..:.
XP_016 SLDIPSQFRSKRSKNQENGPVCSLRDCLRSFT-DLEELDETELYMCHKCKKKQKSTKKFW
320 330 340 350 360 370
440 450 460 470 480 490
pF1KE3 LQKKAKK---QAKKQAKNQRRQQKIQGKV---LHLNDI-CTIDHPEDSDNEAEMSLQGEV
.:: : . :. . ..:.. : :. :. : . .::.: :. : .
XP_016 IQKLPKVLCLHLKRFHWTAYLRNKVDTYVEFPLRGLDMKCYLLEPENSGPES--CLYDLA
380 390 400 410 420 430
500 510 520 530 540 550
pF1KE3 NIKSNHISQEGVMHKEYCVNQKDLNGQAKMIESVTDNQKSTEEVDMKNINMDNDLEVLTS
. .: : : :
XP_016 AVVVHHGSGVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYILFYVEHQAKAGS
440 450 460 470 480 490
822 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:12:10 2016 done: Mon Nov 7 00:12:12 2016
Total Scan time: 9.140 Total Display time: 0.190
Function used was FASTA [36.3.4 Apr, 2011]