FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6273, 779 aa 1>>>pF1KB6273 779 - 779 aa - 779 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.6480+/-0.000907; mu= 0.3903+/- 0.055 mean_var=208.6965+/-43.057, 0's: 0 Z-trim(113.1): 32 B-trim: 371 in 1/54 Lambda= 0.088780 statistics sampled from 13725 (13754) to 13725 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.422), width: 16 Scan time: 4.100 The best scores are: opt bits E(32554) CCDS31959.1 SUPT20H gene_id:55578|Hs108|chr13 ( 779) 5152 672.9 5.4e-193 CCDS9362.1 SUPT20H gene_id:55578|Hs108|chr13 ( 733) 4638 607.0 3.4e-173 CCDS61311.1 SUPT20H gene_id:55578|Hs108|chr13 ( 811) 3542 466.7 6.7e-131 >>CCDS31959.1 SUPT20H gene_id:55578|Hs108|chr13 (779 aa) initn: 5152 init1: 5152 opt: 5152 Z-score: 3578.3 bits: 672.9 E(32554): 5.4e-193 Smith-Waterman score: 5152; 99.9% identity (100.0% similar) in 779 aa overlap (1-779:1-779) 10 20 30 40 50 60 pF1KB6 MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVKKLRRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVKKLRRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 VNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 VNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 PPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 PPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 TSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 TSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB6 YSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 YSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB6 AIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGTQYQKTKLTILQSLGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 AIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGTQYQKTKLTILQSLGD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB6 PLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 PLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCP 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB6 VKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 VKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNY 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB6 FTPQQTSSFLKSPTPPPSSKPSSIPRKSSVDLNQVSMLSPAALSPASSSQRTTATQVMAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 FTPQQTSSFLKSPTPPPSSKPSSIPRKSSVDLNQVSMLSPAALSPASSSQRTTATQVMAN 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB6 SAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGINLSGLLPSGGLLPNALPSAMQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGINLSGLLPSGGLLPNALPSAMQ 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB6 AASQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQQQQQQLSQFTPQQPQQPTTCSPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 AASQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQQQQQQLSQFTPQQPQQPTTCSPQQ 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB6 PGEQGSEQGSTSQEQALSAQQAAVINLTGVGSFMQSQAAVLSQLGSVENRPEQSLPQQRF ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: CCDS31 PGEQGSEQGSTSQEQALSAQQAAVINLTGVGSFMQSQAAVLSQLGSAENRPEQSLPQQRF 670 680 690 700 710 720 730 740 750 760 770 pF1KB6 QLSSAFQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHHHRHTGSQSKSKMKRGTPTTPKF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 QLSSAFQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHHHRHTGSQSKSKMKRGTPTTPKF 730 740 750 760 770 >>CCDS9362.1 SUPT20H gene_id:55578|Hs108|chr13 (733 aa) initn: 4729 init1: 4294 opt: 4638 Z-score: 3222.9 bits: 607.0 E(32554): 3.4e-173 Smith-Waterman score: 4638; 96.7% identity (98.4% similar) in 729 aa overlap (1-728:1-729) 10 20 30 40 50 pF1KB6 MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVK-KLRR ::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: CCDS93 MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVKQKLRR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB6 NVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 NVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB6 LPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 LPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHS 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB6 ITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 ITSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFK 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB6 RYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 RYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCN 250 260 270 280 290 300 300 310 320 330 340 350 pF1KB6 LAIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGTQYQKTKLTILQSLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 LAIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGTQYQKTKLTILQSLG 310 320 330 340 350 360 360 370 380 390 400 410 pF1KB6 DPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 DPLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKC 370 380 390 400 410 420 420 430 440 450 460 470 pF1KB6 PVKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 PVKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGN 430 440 450 460 470 480 480 490 500 510 520 530 pF1KB6 YFTPQQTSSFLKSPTPPPSSKPSSIPRKSSVDLNQVSMLSPAALSPASSSQRTTATQVMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 YFTPQQTSSFLKSPTPPPSSKPSSIPRKSSVDLNQVSMLSPAALSPASSSQRTTATQVMA 490 500 510 520 530 540 540 550 560 570 580 590 pF1KB6 NSAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGINLSGLLPSGGLLPNALPSAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 NSAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGINLSGLLPSGGLLPNALPSAM 550 560 570 580 590 600 600 610 620 630 640 650 pF1KB6 QAASQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQQQQQQLSQFTPQQPQQPTTCSPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 QAASQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQQQQQQLSQFTPQQPQQPTTCSPQ 610 620 630 640 650 660 660 670 680 690 700 710 pF1KB6 QPGEQGSEQGSTSQEQALSAQQAAVINLTGVGSFMQSQAAVLSQLGSVENRPEQSLPQQR ::::::::::::::::::::::::::::::::::::::::... :.. .. .: .. CCDS93 QPGEQGSEQGSTSQEQALSAQQAAVINLTGVGSFMQSQAAAVAILAASNGYGSSSSTNSS 670 680 690 700 710 720 720 730 740 750 760 770 pF1KB6 FQLSSAFQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHHHRHTGSQSKSKMKRGTPTTPKF :::..: CCDS93 ATSSSAYRQPVKK 730 >>CCDS61311.1 SUPT20H gene_id:55578|Hs108|chr13 (811 aa) initn: 4685 init1: 3542 opt: 3542 Z-score: 2463.5 bits: 466.7 E(32554): 6.7e-131 Smith-Waterman score: 4482; 87.4% identity (88.8% similar) in 807 aa overlap (1-728:1-807) 10 20 30 40 50 60 pF1KB6 MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVKKLRRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEVKKLRRN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 VNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 VNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 PPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 PPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 TSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 TSDNHKWTQEDKLLLESQLILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB6 YSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 YSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB6 AIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGTQYQKTKLTILQSLGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 AIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGTQYQKTKLTILQSLGD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB6 PLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 PLYYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVNQYQELVQNEAKCP 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB6 VKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 VKMSHSSSGSASLSQVSPGKETDQTETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNY 430 440 450 460 470 480 490 500 510 520 530 pF1KB6 FTPQQTSSFLKSPTPPPSSKPSSIPRKSSVDLNQVSMLSPAALSPASSSQR--------- ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 FTPQQTSSFLKSPTPPPSSKPSSIPRKSSVDLNQVSMLSPAALSPASSSQRSGTPKPSTP 490 500 510 520 530 540 pF1KB6 ------------------------------------------------------------ CCDS61 TPTPSSTPHPPDAQSSTPSTPSATPTPQDSGFTPQPTLLTQFAQQQRSLSQAMPVTTIPL 550 560 570 580 590 600 540 550 560 570 580 pF1KB6 ----------TTATQVMANSAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGINL :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 STMVTSITPGTTATQVMANSAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGINL 610 620 630 640 650 660 590 600 610 620 630 640 pF1KB6 SGLLPSGGLLPNALPSAMQAASQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQQQQQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 SGLLPSGGLLPNALPSAMQAASQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQQQQQQ 670 680 690 700 710 720 650 660 670 680 690 700 pF1KB6 LSQFTPQQPQQPTTCSPQQPGEQGSEQGSTSQEQALSAQQAAVINLTGVGSFMQSQAAVL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.. CCDS61 LSQFTPQQPQQPTTCSPQQPGEQGSEQGSTSQEQALSAQQAAVINLTGVGSFMQSQAAAV 730 740 750 760 770 780 710 720 730 740 750 760 pF1KB6 SQLGSVENRPEQSLPQQRFQLSSAFQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHHHRHT . :.. .. .: .. :::..: CCDS61 AILAASNGYGSSSSTNSSATSSSAYRQPVKK 790 800 810 779 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:14:12 2016 done: Mon Nov 7 00:14:12 2016 Total Scan time: 4.100 Total Display time: 0.080 Function used was FASTA [36.3.4 Apr, 2011]