FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8544, 902 aa 1>>>pF1KB8544 902 - 902 aa - 902 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.2529+/-0.00115; mu= 1.5268+/- 0.069 mean_var=180.7790+/-35.909, 0's: 0 Z-trim(108.2): 27 B-trim: 0 in 0/50 Lambda= 0.095389 statistics sampled from 10046 (10061) to 10046 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.309), width: 16 Scan time: 3.200 The best scores are: opt bits E(32554) CCDS11875.1 RBBP8 gene_id:5932|Hs108|chr18 ( 897) 5928 829.1 0 CCDS11874.1 RBBP8 gene_id:5932|Hs108|chr18 ( 867) 5128 719.0 9.3e-207 CCDS13498.1 RBBP8NL gene_id:140893|Hs108|chr20 ( 664) 455 75.9 2.9e-13 >>CCDS11875.1 RBBP8 gene_id:5932|Hs108|chr18 (897 aa) initn: 5934 init1: 4684 opt: 5928 Z-score: 4420.2 bits: 829.1 E(32554): 0 Smith-Waterman score: 5928; 99.2% identity (99.3% similar) in 902 aa overlap (1-902:1-897) 10 20 30 40 50 60 pF1KB8 MNISGSSCGSPNSADTSSDFKDLWTKLKECHDREVQGLQVKVTKLKQERILDAQRLEEFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MNISGSSCGSPNSADTSSDFKDLWTKLKECHDREVQGLQVKVTKLKQERILDAQRLEEFF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 TKNQQLREQQKVLHETIKVLEDRLRAGLCDRCAVTEEHMRKKQQEFENIRQQNLKLITEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TKNQQLREQQKVLHETIKVLEDRLRAGLCDRCAVTEEHMRKKQQEFENIRQQNLKLITEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 MNERNTLQEENKKLSEQLQQKIENDQQHQAAELECEEDVIPDSPITAFSFSGVNRLRRKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MNERNTLQEENKKLSEQLQQKIENDQQHQAAELECEEDVIPDSPITAFSFSGVNRLRRKE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 NPHVRYIEQTHTKLEHSVCANEMRKVSKSSTHPQHNPNENEILVADTYDQSQSPMAKAHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 NPHVRYIEQTHTKLEHSVCANEMRKVSKSSTHPQHNPNENEILVADTYDQSQSPMAKAHG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 TSSYTPDKSSFNLATVVAETLGLGVQEESETQGPMSPLGDELYHCLEGNHKKQPFEESTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TSSYTPDKSSFNLATVVAETLGLGVQEESETQGPMSPLGDELYHCLEGNHKKQPFEESTR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 NTEDSLRFSDSTSKTPPQEELPTRVSSPVFGATSSIKSGLDLNTSLSPSLLQPGKKKHLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 NTEDSLRFSDSTSKTPPQEELPTRVSSPVFGATSSIKSGLDLNTSLSPSLLQPGKKKHLK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB8 TLPFSNTCISRLEKTRSKSEDSALFTHHSLGSEVNKIIIQSSNKQILINKNISESLGEQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TLPFSNTCISRLEKTRSKSEDSALFTHHSLGSEVNKIIIQSSNKQILINKNISESLGEQN 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB8 RTEYGKDSNTDKHLEPLKSLGGRTSKRKKTEEESEHEVSCPQASFDKENAFPFPMDNQFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 RTEYGKDSNTDKHLEPLKSLGGRTSKRKKTEEESEHEVSCPQASFDKENAFPFPMDNQFS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB8 MNGDCVMYKPLDLSDRFSAIQRQEKSQGSETSKNKFRQVTLYEALKTIPKGFSSSRKASD ::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MNGDCVMDKPLDLSDRFSAIQRQEKSQGSETSKNKFRQVTLYEALKTIPKGFSSSRKASD 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB8 GNCTLPKDSPGEPCSQECIILQPLNKCSPDNKPSLQIKEENAVFKIPLRPRESLETENVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GNCTLPKDSPGEPCSQECIILQPLNKCSPDNKPSLQIKEENAVFKIPLRPRESLETENVL 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB8 DDIKSAGSHEPIKIQTRSDHGGCELASVLQLNPCRTGKIKSLQNNQDVSFENIQWSIDPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 DDIKSAGSHEPIKIQTRSDHGGCELASVLQLNPCRTGKIKSLQNNQDVSFENIQWSIDPG 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB8 ADLSQYKMDVTVIDTKDGSQSKLGGETVDMDCTLVSETVLLKMKKQEQKGEKSSMLFYID :::::::::::::::::::::::::::::::::::::::::::::::::::::: . CCDS11 ADLSQYKMDVTVIDTKDGSQSKLGGETVDMDCTLVSETVLLKMKKQEQKGEKSS-----N 670 680 690 700 710 730 740 750 760 770 780 pF1KB8 EERKMNDSLEDMFDRTTHEEYESCLADSFSQAADEEEELSTATKKLHTHGDKQDKVKQKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 EERKMNDSLEDMFDRTTHEEYESCLADSFSQAADEEEELSTATKKLHTHGDKQDKVKQKA 720 730 740 750 760 770 790 800 810 820 830 840 pF1KB8 FVEPYFKGDERETSLQNFPHIEVVRKKEERRKLLGHTCKECEIYYADMPAEEREKKLASC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 FVEPYFKGDERETSLQNFPHIEVVRKKEERRKLLGHTCKECEIYYADMPAEEREKKLASC 780 790 800 810 820 830 850 860 870 880 890 900 pF1KB8 SRHRFRYIPPNTPENFWEVGFPSTQTCMERGYIKEDLDPCPRPKRRQPYNAIFSPKGKEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SRHRFRYIPPNTPENFWEVGFPSTQTCMERGYIKEDLDPCPRPKRRQPYNAIFSPKGKEQ 840 850 860 870 880 890 pF1KB8 KT :: CCDS11 KT >>CCDS11874.1 RBBP8 gene_id:5932|Hs108|chr18 (867 aa) initn: 5134 init1: 4684 opt: 5128 Z-score: 3825.4 bits: 719.0 E(32554): 9.3e-207 Smith-Waterman score: 5135; 96.8% identity (98.0% similar) in 814 aa overlap (1-814:1-801) 10 20 30 40 50 60 pF1KB8 MNISGSSCGSPNSADTSSDFKDLWTKLKECHDREVQGLQVKVTKLKQERILDAQRLEEFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MNISGSSCGSPNSADTSSDFKDLWTKLKECHDREVQGLQVKVTKLKQERILDAQRLEEFF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 TKNQQLREQQKVLHETIKVLEDRLRAGLCDRCAVTEEHMRKKQQEFENIRQQNLKLITEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TKNQQLREQQKVLHETIKVLEDRLRAGLCDRCAVTEEHMRKKQQEFENIRQQNLKLITEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 MNERNTLQEENKKLSEQLQQKIENDQQHQAAELECEEDVIPDSPITAFSFSGVNRLRRKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MNERNTLQEENKKLSEQLQQKIENDQQHQAAELECEEDVIPDSPITAFSFSGVNRLRRKE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 NPHVRYIEQTHTKLEHSVCANEMRKVSKSSTHPQHNPNENEILVADTYDQSQSPMAKAHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 NPHVRYIEQTHTKLEHSVCANEMRKVSKSSTHPQHNPNENEILVADTYDQSQSPMAKAHG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 TSSYTPDKSSFNLATVVAETLGLGVQEESETQGPMSPLGDELYHCLEGNHKKQPFEESTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TSSYTPDKSSFNLATVVAETLGLGVQEESETQGPMSPLGDELYHCLEGNHKKQPFEESTR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 NTEDSLRFSDSTSKTPPQEELPTRVSSPVFGATSSIKSGLDLNTSLSPSLLQPGKKKHLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 NTEDSLRFSDSTSKTPPQEELPTRVSSPVFGATSSIKSGLDLNTSLSPSLLQPGKKKHLK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB8 TLPFSNTCISRLEKTRSKSEDSALFTHHSLGSEVNKIIIQSSNKQILINKNISESLGEQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TLPFSNTCISRLEKTRSKSEDSALFTHHSLGSEVNKIIIQSSNKQILINKNISESLGEQN 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB8 RTEYGKDSNTDKHLEPLKSLGGRTSKRKKTEEESEHEVSCPQASFDKENAFPFPMDNQFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 RTEYGKDSNTDKHLEPLKSLGGRTSKRKKTEEESEHEVSCPQASFDKENAFPFPMDNQFS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB8 MNGDCVMYKPLDLSDRFSAIQRQEKSQGSETSKNKFRQVTLYEALKTIPKGFSSSRKASD ::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MNGDCVMDKPLDLSDRFSAIQRQEKSQGSETSKNKFRQVTLYEALKTIPKGFSSSRKASD 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB8 GNCTLPKDSPGEPCSQECIILQPLNKCSPDNKPSLQIKEENAVFKIPLRPRESLETENVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 GNCTLPKDSPGEPCSQECIILQPLNKCSPDNKPSLQIKEENAVFKIPLRPRESLETENVL 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB8 DDIKSAGSHEPIKIQTRSDHGGCELASVLQLNPCRTGKIKSLQNNQDVSFENIQWSIDPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 DDIKSAGSHEPIKIQTRSDHGGCELASVLQLNPCRTGKIKSLQNNQDVSFENIQWSIDPG 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB8 ADLSQYKMDVTVIDTKDGSQSKLGGETVDMDCTLVSETVLLKMKKQEQKGEKSSMLFYID :::::::::::::::::::::::::::::::::::::::::::::::::::::: . CCDS11 ADLSQYKMDVTVIDTKDGSQSKLGGETVDMDCTLVSETVLLKMKKQEQKGEKSS-----N 670 680 690 700 710 730 740 750 760 770 780 pF1KB8 EERKMNDSLEDMFDRTTHEEYESCLADSFSQAADEEEELSTATKKLHTHGDKQDKVKQKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 EERKMNDSLEDMFDRTTHEEYESCLADSFSQAADEEEELSTATKKLHTHGDKQDKVKQKA 720 730 740 750 760 770 790 800 810 820 830 840 pF1KB8 FVEPYFKGDERETSLQNFPHIEVVRKKEERRKLLGHTCKECEIYYADMPAEEREKKLASC :::::::::: :. ... ..:.:.:. : CCDS11 FVEPYFKGDE---SI-----MQICQQKKEKRNWLPAQDTDSATFHPTHQRIFGKLVFLPL 780 790 800 810 820 850 860 870 880 890 900 pF1KB8 SRHRFRYIPPNTPENFWEVGFPSTQTCMERGYIKEDLDPCPRPKRRQPYNAIFSPKGKEQ CCDS11 RLVWKEVILRKILILVLVQKDVSLTTQYFLQKARSRRHRR 830 840 850 860 >>CCDS13498.1 RBBP8NL gene_id:140893|Hs108|chr20 (664 aa) initn: 489 init1: 441 opt: 455 Z-score: 351.7 bits: 75.9 E(32554): 2.9e-13 Smith-Waterman score: 462; 27.8% identity (51.8% similar) in 569 aa overlap (20-553:4-546) 10 20 30 40 50 60 pF1KB8 MNISGSSCGSPNSADTSSDFKDLWTKLKECHDREVQGLQVKVTKLKQERILDAQRLEEFF : . ..::: :..:: ::: :. .:..:: ::::.::.: CCDS13 MESFMESLNRLKEIHEKEVLGLQNKLLELNSERCRDAQRIEELF 10 20 30 40 70 80 90 100 110 120 pF1KB8 TKNQQLREQQKVLHETIKVLEDRLRAGLCDRCAVTEEHMRKKQQEFENIRQQNLKLITEL .::.:::::::.:.:...:::.:::::::::: ::.: ::.:::::. . :::. : : CCDS13 SKNHQLREQQKTLKENLRVLENRLRAGLCDRCMVTQELARKRQQEFESSHLQNLQRIFIL 50 60 70 80 90 100 130 140 150 160 170 pF1KB8 MNERNTLQEENKKLSEQLQQ-KIENDQQHQAAELECEEDVIPDSPITAFSFSGVNRLRRK :: : :.:::. :.:.... . .:. . :. : : : ::. : .: . . .: CCDS13 TNEMNGLKEENETLKEEVKRLRGLGDRPKPRAK-EGTSD--PPSPLLLPSPGGWKAITEK 110 120 130 140 150 160 180 190 200 210 220 pF1KB8 ENPHVRYIEQTHTKL----EHSVCANEMRKVSKSST------------HPQHNPNENEIL . :. : . :.. ... :.: : ::. :. . CCDS13 PPGGHEEAEEDHQGVGLRGEEKPAGHRTSPVAKISPGATLPESRAPDMSPQRISNQLHGT 170 180 190 200 210 220 230 240 250 260 270 pF1KB8 VADTYDQSQS-PMAK--AHGTSSYTPDKSS-----FNLATVVAETLGLGVQEESETQGP- .: . ::. : . :.:: : .:: .. . . : . ..: CCDS13 IAVVRPGSQACPADRGPANGTPPPLPARSSPPSPAYERGLSLDSFLRASRPSAMTHEAPK 230 240 250 260 270 280 280 290 300 310 320 pF1KB8 MSPLGDELYHCLEGN----HKKQPFEE--STRNTEDSLRFSDSTSKTPPQEELPTRVSSP .:: :.: :: . : ..: . . .. :..: .. : ::.. CCDS13 LSPKVDRL--CLLNRPLSLHLQSPHSSPLAPAAAPSDPRLQDLKAREAEAWEEPTEL--- 290 300 310 320 330 330 340 350 360 370 380 pF1KB8 VFGATSSIKSGLDLNTSLSPSLLQPGKKKHLKTLPFSNTCISRLEKTRSKSEDSALFTHH .: :.. . :: . :: ...:.. ... : . : .. : CCDS13 -LGLPSALAGMQDLRLEGALHLLL--AQQQLRARARAGSVRPRGQPTPGEMLPSLPVGSD 340 350 360 370 380 390 390 400 410 420 430 440 pF1KB8 SLGSEVNKIIIQSSNKQILINKNISESL-GEQNRTEYG--KDSNTDKHLEPLKSLGGRTS : : : . . . ... . . :. .::: . .: :: :. : ::. CCDS13 SEGPENEGTRAALAAAGLSGGRHTQPAGPGRAQRTEAAATQDCALDKPLD--LSEWGRAR 400 410 420 430 440 450 450 460 470 480 490 500 pF1KB8 KRKKTEEESEHEVSCPQASFDKENAFPFPMDNQFSMNGDCVMYKPLDLSDRFSAIQRQEK . . ..: : :. ..: : : ...: . .: ::. .. . :. CCDS13 GQDTPKPAGQHGSLSPAAA---HTASPEPP----TQSGP-LTRSPQALSNGTKGTRVPEQ 460 470 480 490 500 510 520 530 540 550 560 pF1KB8 SQGSETSKNKFRQVTLYEALKTIPKGFSSSRKASDGNCTLPKDSPGEPCSQECIILQPLN ..: : . : . . . : .: . : . :: : : CCDS13 EEAS-TPMDPSRPLPGSQLSLSSP----GSTEDEDTGRPLPPPHPQPPPHPQPPDLDGHP 510 520 530 540 550 570 580 590 600 610 620 pF1KB8 KCSPDNKPSLQIKEENAVFKIPLRPRESLETENVLDDIKSAGSHEPIKIQTRSDHGGCEL CCDS13 EPSKAEVLRPESDELDETDTPGSEVGLSSQAEATTSTTGEGPECICTQEHGQGPPRKRKR 560 570 580 590 600 610 902 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:14:54 2016 done: Mon Nov 7 00:14:54 2016 Total Scan time: 3.200 Total Display time: 0.060 Function used was FASTA [36.3.4 Apr, 2011]