FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2229, 245 aa 1>>>pF1KE2229 245 - 245 aa - 245 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8269+/-0.000285; mu= 18.3603+/- 0.018 mean_var=81.2090+/-16.203, 0's: 0 Z-trim(119.7): 25 B-trim: 437 in 1/52 Lambda= 0.142322 statistics sampled from 34038 (34065) to 34038 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.399), width: 16 Scan time: 7.570 The best scores are: opt bits E(85289) NP_689772 (OMIM: 612546) Williams-Beuren syndrome ( 245) 1673 352.3 4.5e-97 XP_016867266 (OMIM: 612546) PREDICTED: Williams-Be ( 271) 1093 233.3 3.4e-61 XP_016867267 (OMIM: 612546) PREDICTED: Williams-Be ( 271) 1093 233.3 3.4e-61 XP_011514081 (OMIM: 615733) PREDICTED: probable 18 ( 248) 149 39.4 0.0071 NP_059998 (OMIM: 615733) probable 18S rRNA (guanin ( 281) 149 39.5 0.0077 NP_001189489 (OMIM: 615733) probable 18S rRNA (gua ( 298) 149 39.5 0.0081 >>NP_689772 (OMIM: 612546) Williams-Beuren syndrome chro (245 aa) initn: 1673 init1: 1673 opt: 1673 Z-score: 1863.8 bits: 352.3 E(85289): 4.5e-97 Smith-Waterman score: 1673; 98.8% identity (99.2% similar) in 245 aa overlap (1-245:1-245) 10 20 30 40 50 60 pF1KE2 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQARAPGLYQRLSLCTL ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: NP_689 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGGLVCLTTRTNWSNLQYKEAL :::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::: NP_689 GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGGLVCLTTRTNSSNLQYKEAL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 EATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPSWWWYPASLPRMASSPALSTCTESGRR ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: NP_689 EATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPSWRWYPASLPRMASSPALSTCTESGRR 190 200 210 220 230 240 pF1KE2 PRLRK ::::: NP_689 PRLRK >>XP_016867266 (OMIM: 612546) PREDICTED: Williams-Beuren (271 aa) initn: 1144 init1: 1093 opt: 1093 Z-score: 1219.7 bits: 233.3 E(85289): 3.4e-61 Smith-Waterman score: 1611; 89.3% identity (89.7% similar) in 271 aa overlap (1-245:1-271) 10 20 30 40 50 60 pF1KE2 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQARAPGLYQRLSLCTL ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: XP_016 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTL 70 80 90 100 110 120 130 140 150 160 pF1KE2 GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPG-------------------- :::::::::::::::::::::::::::::::::::::::: XP_016 GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGTTIPSRDGPGLWLLPLPHLT 130 140 150 160 170 180 170 180 190 200 210 pF1KE2 ------GLVCLTTRTNWSNLQYKEALEATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPS :::::::::: ::::::::::::::::::::::::::::::::::::::::::: XP_016 YPSPPGGLVCLTTRTNSSNLQYKEALEATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPS 190 200 210 220 230 240 220 230 240 pF1KE2 WWWYPASLPRMASSPALSTCTESGRRPRLRK : ::::::::::::::::::::::::::::: XP_016 WRWYPASLPRMASSPALSTCTESGRRPRLRK 250 260 270 >>XP_016867267 (OMIM: 612546) PREDICTED: Williams-Beuren (271 aa) initn: 1144 init1: 1093 opt: 1093 Z-score: 1219.7 bits: 233.3 E(85289): 3.4e-61 Smith-Waterman score: 1611; 89.3% identity (89.7% similar) in 271 aa overlap (1-245:1-271) 10 20 30 40 50 60 pF1KE2 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQARAPGLYQRLSLCTL ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: XP_016 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTL 70 80 90 100 110 120 130 140 150 160 pF1KE2 GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPG-------------------- :::::::::::::::::::::::::::::::::::::::: XP_016 GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGTTIPSRDGPGLWLLPLPHLT 130 140 150 160 170 180 170 180 190 200 210 pF1KE2 ------GLVCLTTRTNWSNLQYKEALEATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPS :::::::::: ::::::::::::::::::::::::::::::::::::::::::: XP_016 YPSPPGGLVCLTTRTNSSNLQYKEALEATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPS 190 200 210 220 230 240 220 230 240 pF1KE2 WWWYPASLPRMASSPALSTCTESGRRPRLRK : ::::::::::::::::::::::::::::: XP_016 WRWYPASLPRMASSPALSTCTESGRRPRLRK 250 260 270 >>XP_011514081 (OMIM: 615733) PREDICTED: probable 18S rR (248 aa) initn: 128 init1: 64 opt: 149 Z-score: 172.6 bits: 39.4 E(85289): 0.0071 Smith-Waterman score: 149; 31.7% identity (54.0% similar) in 139 aa overlap (13-150:4-131) 10 20 30 40 50 60 pF1KE2 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ :.: : :: : .: . . : : .. . .. :.: : . XP_011 MASRGR-RPEHGGPP---ELFYDETEARKYVRN-SRMIDIQTRMAGRAL-E 10 20 30 40 70 80 90 100 110 pF1KE2 ALPGPPHSA-LILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQARAPGLYQRLSLCT : : .. .::..::::: .. : : . :.: ::.::..: . : : XP_011 LLYLPENKPCYLLDIGCGTGLSGSYLSDEGHYWV-GLDISPAMLDEAVDREIEGDLLLGD 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE2 LGQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGGLVCLTTRTNWSNLQYKEA .:: .: ::::. . ..:. : ::: XP_011 MGQ-GIPFKPGTFDGCISISAV---QWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAV 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE2 LEATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPSWWWYPASLPRMASSPALSTCTESGR XP_011 LQLYPENSEQLELITTQATKAGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEVPIKDV 170 180 190 200 210 220 >>NP_059998 (OMIM: 615733) probable 18S rRNA (guanine-N( (281 aa) initn: 128 init1: 64 opt: 149 Z-score: 171.9 bits: 39.5 E(85289): 0.0077 Smith-Waterman score: 149; 31.7% identity (54.0% similar) in 139 aa overlap (13-150:4-131) 10 20 30 40 50 60 pF1KE2 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ :.: : :: : .: . . : : .. . .. :.: : . NP_059 MASRGR-RPEHGGPP---ELFYDETEARKYVRN-SRMIDIQTRMAGRAL-E 10 20 30 40 70 80 90 100 110 pF1KE2 ALPGPPHSA-LILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQARAPGLYQRLSLCT : : .. .::..::::: .. : : . :.: ::.::..: . : : NP_059 LLYLPENKPCYLLDIGCGTGLSGSYLSDEGHYWV-GLDISPAMLDEAVDREIEGDLLLGD 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE2 LGQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGGLVCLTTRTNWSNLQYKEA .:: .: ::::. . ..:. : ::: NP_059 MGQ-GIPFKPGTFDGCISISAV---QWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAV 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE2 LEATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPSWWWYPASLPRMASSPALSTCTESGR NP_059 LQLYPENSEQLELITTQATKAGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQ 170 180 190 200 210 220 >>NP_001189489 (OMIM: 615733) probable 18S rRNA (guanine (298 aa) initn: 128 init1: 64 opt: 149 Z-score: 171.6 bits: 39.5 E(85289): 0.0081 Smith-Waterman score: 149; 31.7% identity (54.0% similar) in 139 aa overlap (13-150:4-131) 10 20 30 40 50 60 pF1KE2 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ :.: : :: : .: . . : : .. . .. :.: : . NP_001 MASRGR-RPEHGGPP---ELFYDETEARKYVRN-SRMIDIQTRMAGRAL-E 10 20 30 40 70 80 90 100 110 pF1KE2 ALPGPPHSA-LILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQARAPGLYQRLSLCT : : .. .::..::::: .. : : . :.: ::.::..: . : : NP_001 LLYLPENKPCYLLDIGCGTGLSGSYLSDEGHYWV-GLDISPAMLDEAVDREIEGDLLLGD 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE2 LGQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGGLVCLTTRTNWSNLQYKEA .:: .: ::::. . ..:. : ::: NP_001 MGQ-GIPFKPGTFDGCISISAV---QWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAV 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE2 LEATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPSWWWYPASLPRMASSPALSTCTESGR NP_001 LQLYPENSEQLELITTQATKAGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQ 170 180 190 200 210 220 245 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:16:08 2016 done: Mon Nov 7 00:16:09 2016 Total Scan time: 7.570 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]