FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2229, 245 aa
  1>>>pF1KE2229 245 - 245 aa - 245 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2301+/-0.000615; mu= 15.7661+/- 0.037
 mean_var=76.4354+/-15.227, 0's: 0 Z-trim(112.7): 14  B-trim: 101 in 1/53
 Lambda= 0.146699
 statistics sampled from 13415 (13424) to 13415 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.412), width:  16
 Scan time:  2.520

The best scores are:                                      opt bits E(32554)
CCDS5561.1 WBSCR27 gene_id:155368|Hs108|chr7       ( 245) 1673 362.6 1.3e-100


>>CCDS5561.1 WBSCR27 gene_id:155368|Hs108|chr7            (245 aa)
 initn: 1673 init1: 1673 opt: 1673  Z-score: 1919.6  bits: 362.6 E(32554): 1.3e-100
Smith-Waterman score: 1673; 98.8% identity (99.2% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KE2 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAQEEGGSLPEVRARVRAAHGIPDLAQKLHFYDRWAPDYDQDVATLLYRAPRLAVDCLTQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQARAPGLYQRLSLCTL
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS55 ALPGPPHSALILDVACGTGLVAAELRAPGFLQLHGVDGSPGMLEQAQAPGLYQRLSLCTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGGLVCLTTRTNWSNLQYKEAL
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
CCDS55 GQEPLPSPEGTFDAVLIVGALSDGQVPCNAIPELHVTKPGGLVCLTTRTNSSNLQYKEAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 EATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPSWWWYPASLPRMASSPALSTCTESGRR
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS55 EATLDRLEQAGMWEGLVAWPVDRLWTAGSWLPPSWRWYPASLPRMASSPALSTCTESGRR
              190       200       210       220       230       240

            
pF1KE2 PRLRK
       :::::
CCDS55 PRLRK
            




245 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:16:07 2016 done: Mon Nov  7 00:16:07 2016
 Total Scan time:  2.520 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]