Result of FASTA (ccds) for
pFN21AE1481
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1481, 343 aa
1>>>pF1KE1481 343 - 343 aa - 343 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1073+/-0.00103; mu= 3.8784+/- 0.062
mean_var=164.2043+/-33.925, 0's: 0 Z-trim(109.6): 82 B-trim: 121 in 2/50
Lambda= 0.100088
statistics sampled from 10888 (10968) to 10888 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.337), width: 16
Scan time: 2.910
The best scores are: opt bits E(32554)
CCDS8569.1 LRRC23 gene_id:10233|Hs108|chr12 ( 343) 2217 332.0 4.4e-91
CCDS8568.1 LRRC23 gene_id:10233|Hs108|chr12 ( 312) 1633 247.6 1e-65
CCDS5830.1 LRGUK gene_id:136332|Hs108|chr7 ( 825) 473 80.4 5.8e-15
>>CCDS8569.1 LRRC23 gene_id:10233|Hs108|chr12 (343 aa)
initn: 2217 init1: 2217 opt: 2217 Z-score: 1748.6 bits: 332.0 E(32554): 4.4e-91
Smith-Waterman score: 2217; 99.7% identity (99.7% similar) in 343 aa overlap (1-343:1-343)
10 20 30 40 50 60
pF1KE1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DGNLLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 SREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLE
250 260 270 280 290 300
310 320 330 340
pF1KE1 RLDKEFYEEEERAEADVIRQRLKEEKEQEPEPQRDLEPEQSLI
:::::::::::::::::::::::::::::::::::::::::::
CCDS85 RLDKEFYEEEERAEADVIRQRLKEEKEQEPEPQRDLEPEQSLI
310 320 330 340
>>CCDS8568.1 LRRC23 gene_id:10233|Hs108|chr12 (312 aa)
initn: 1633 init1: 1633 opt: 1633 Z-score: 1293.5 bits: 247.6 E(32554): 1e-65
Smith-Waterman score: 1633; 99.6% identity (99.6% similar) in 253 aa overlap (1-253:1-253)
10 20 30 40 50 60
pF1KE1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 DGNLLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLE
:::::::::::::
CCDS85 SREMKSLQYLNLRRSKTLAFRPDQTPRGSHHMYDREQRMPVFAPKLEIHHNLRPRICSVP
250 260 270 280 290 300
>>CCDS5830.1 LRGUK gene_id:136332|Hs108|chr7 (825 aa)
initn: 343 init1: 124 opt: 473 Z-score: 382.1 bits: 80.4 E(32554): 5.8e-15
Smith-Waterman score: 473; 32.9% identity (64.8% similar) in 304 aa overlap (16-315:73-372)
10 20 30 40
pF1KE1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFP-EEWL
::. .::. : : : . .:.: . :: .
CCDS58 SFPMGQKTKGSSNIASSYLLQQLMHRYQELDSDGDEDQGEGEAGSEESSESEMLNLEEEF
50 60 70 80 90 100
50 60 70 80 90 100
pF1KE1 PTPLTEDMMKEGLSLLCKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLT
: :. . ..: : ..:.: ..:..: .. .: :. .: .:.::. .:.: :..
CCDS58 DGVLREEAVAKALHHLGRSGSGTEQVYLNLTLSGCNLIDVSILCGYVHLQKLDLSANKIE
110 120 130 140 150 160
110 120 130 140 150 160
pF1KE1 DLSPLNYLTHLLWLKADGNLLRSAQMNELP--YLQIASFAYNQITDTEGIS-HPRLETLN
::: .. . .:: :.:. : : .. .: : :. :.:..:::.. .: . : :
CCDS58 DLSCVSCMPYLLELNASQNNL-TTFFNFKPPKNLKKADFSHNQISEICDLSAYHALTKLI
170 180 190 200 210 220
170 180 190 200 210 220
pF1KE1 LKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDL
: :: :. ..:: : .: . : .:.. . :.: .: : :..:... . :::::
CCDS58 LDGNEIEEISGL--EMCNNLIHLSLANNKITTINGLNKLPIKILCLSNNQIEMITGLEDL
230 240 250 260 270
230 240 250 260 270 280
pF1KE1 SNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNP
. : .: : :::..:.:. .. :. .::. : .:.: :. ...:: ::.: ::.::
CCDS58 KALQNLDLSHNQISSLQGL-ENHDLLEVINLEDNKIAELREIEYIKNLPILRVLNLLENP
280 290 300 310 320 330
290 300 310 320 330 340
pF1KE1 CTDETSYRQEALVQMPYLERLDKEFYEEEERAEADVIRQRLKEEKEQEPEPQRDLEPEQS
... : .. .. : .::.. . ::.. :
CCDS58 IQEKSEYWFFVIFMLLRLTELDQKKIKVEEKVSAVNKYDPPPEVVAAQDHLTHVVNSVMQ
340 350 360 370 380 390
pF1KE1 LI
CCDS58 PQRIFDSTLPSLDAPYPMLILAGPEACGKRELAHRLCRQFSTYFRYGACHTTRPPYFGEG
400 410 420 430 440 450
343 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:16:36 2016 done: Mon Nov 7 00:16:37 2016
Total Scan time: 2.910 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]