Result of FASTA (ccds) for
pFN21AB7961
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7961, 265 aa
1>>>pF1KB7961 265 - 265 aa - 265 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6643+/-0.000908; mu= 12.8457+/- 0.054
mean_var=67.5294+/-13.751, 0's: 0 Z-trim(105.9): 72 B-trim: 135 in 1/47
Lambda= 0.156073
statistics sampled from 8592 (8666) to 8592 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.266), width: 16
Scan time: 2.190
The best scores are: opt bits E(32554)
CCDS7892.1 ELF5 gene_id:2001|Hs108|chr11 ( 265) 1872 430.3 6.5e-121
CCDS7893.1 ELF5 gene_id:2001|Hs108|chr11 ( 255) 1798 413.7 6.5e-116
CCDS73273.1 ELF5 gene_id:2001|Hs108|chr11 ( 187) 932 218.6 2.5e-57
CCDS58129.1 ELF5 gene_id:2001|Hs108|chr11 ( 160) 820 193.4 8.4e-50
CCDS55753.1 EHF gene_id:26298|Hs108|chr11 ( 277) 479 116.7 1.8e-26
CCDS7894.1 EHF gene_id:26298|Hs108|chr11 ( 300) 479 116.7 1.9e-26
CCDS55752.1 EHF gene_id:26298|Hs108|chr11 ( 322) 479 116.7 2e-26
CCDS1419.1 ELF3 gene_id:1999|Hs108|chr1 ( 371) 465 113.6 2e-25
CCDS4794.1 SPDEF gene_id:25803|Hs108|chr6 ( 335) 331 83.4 2.3e-16
CCDS64063.1 ELF2 gene_id:1998|Hs108|chr4 ( 504) 286 73.3 3.6e-13
CCDS59013.1 SPDEF gene_id:25803|Hs108|chr6 ( 319) 283 72.6 3.9e-13
CCDS64062.1 ELF2 gene_id:1998|Hs108|chr4 ( 521) 277 71.3 1.5e-12
CCDS3745.1 ELF2 gene_id:1998|Hs108|chr4 ( 533) 277 71.3 1.6e-12
CCDS3744.1 ELF2 gene_id:1998|Hs108|chr4 ( 581) 277 71.3 1.7e-12
CCDS82954.1 ELF2 gene_id:1998|Hs108|chr4 ( 593) 277 71.3 1.7e-12
CCDS14617.1 ELF4 gene_id:2000|Hs108|chrX ( 663) 262 68.0 2e-11
CCDS45043.1 ELF1 gene_id:1997|Hs108|chr13 ( 595) 259 67.3 2.9e-11
CCDS9374.1 ELF1 gene_id:1997|Hs108|chr13 ( 619) 259 67.3 3e-11
>>CCDS7892.1 ELF5 gene_id:2001|Hs108|chr11 (265 aa)
initn: 1872 init1: 1872 opt: 1872 Z-score: 2284.3 bits: 430.3 E(32554): 6.5e-121
Smith-Waterman score: 1872; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265)
10 20 30 40 50 60
pF1KB7 MPSLPHSHRVMLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MPSLPHSHRVMLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PEYWTKRHVWEWLQFCCDQYKLDTNCISFCNFNISGLQLCSMTQEEFVEAAGLCGEYLYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PEYWTKRHVWEWLQFCCDQYKLDTNCISFCNFNISGLQLCSMTQEEFVEAAGLCGEYLYF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ILQNIRTQGYSFFNDAEESKATIKDYADSNCLKTSGIKSQDCHSHSRTSLQSSHLWEFVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ILQNIRTQGYSFFNDAEESKATIKDYADSNCLKTSGIKSQDCHSHSRTSLQSSHLWEFVR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 DLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTG
190 200 210 220 230 240
250 260
pF1KB7 ILERVDRRLVYKFGKNAHGWQEDKL
:::::::::::::::::::::::::
CCDS78 ILERVDRRLVYKFGKNAHGWQEDKL
250 260
>>CCDS7893.1 ELF5 gene_id:2001|Hs108|chr11 (255 aa)
initn: 1798 init1: 1798 opt: 1798 Z-score: 2194.5 bits: 413.7 E(32554): 6.5e-116
Smith-Waterman score: 1798; 100.0% identity (100.0% similar) in 255 aa overlap (11-265:1-255)
10 20 30 40 50 60
pF1KB7 MPSLPHSHRVMLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVH
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVH
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 PEYWTKRHVWEWLQFCCDQYKLDTNCISFCNFNISGLQLCSMTQEEFVEAAGLCGEYLYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PEYWTKRHVWEWLQFCCDQYKLDTNCISFCNFNISGLQLCSMTQEEFVEAAGLCGEYLYF
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 ILQNIRTQGYSFFNDAEESKATIKDYADSNCLKTSGIKSQDCHSHSRTSLQSSHLWEFVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ILQNIRTQGYSFFNDAEESKATIKDYADSNCLKTSGIKSQDCHSHSRTSLQSSHLWEFVR
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 DLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTG
180 190 200 210 220 230
250 260
pF1KB7 ILERVDRRLVYKFGKNAHGWQEDKL
:::::::::::::::::::::::::
CCDS78 ILERVDRRLVYKFGKNAHGWQEDKL
240 250
>>CCDS73273.1 ELF5 gene_id:2001|Hs108|chr11 (187 aa)
initn: 1275 init1: 932 opt: 932 Z-score: 1142.8 bits: 218.6 E(32554): 2.5e-57
Smith-Waterman score: 1123; 70.6% identity (70.6% similar) in 265 aa overlap (1-265:1-187)
10 20 30 40 50 60
pF1KB7 MPSLPHSHRVMLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVH
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MPSLPHSHRVMLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQT----------
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 PEYWTKRHVWEWLQFCCDQYKLDTNCISFCNFNISGLQLCSMTQEEFVEAAGLCGEYLYF
CCDS73 ------------------------------------------------------------
130 140 150 160 170 180
pF1KB7 ILQNIRTQGYSFFNDAEESKATIKDYADSNCLKTSGIKSQDCHSHSRTSLQSSHLWEFVR
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 --------GYSFFNDAEESKATIKDYADSNCLKTSGIKSQDCHSHSRTSLQSSHLWEFVR
60 70 80 90 100
190 200 210 220 230 240
pF1KB7 DLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTG
110 120 130 140 150 160
250 260
pF1KB7 ILERVDRRLVYKFGKNAHGWQEDKL
:::::::::::::::::::::::::
CCDS73 ILERVDRRLVYKFGKNAHGWQEDKL
170 180
>>CCDS58129.1 ELF5 gene_id:2001|Hs108|chr11 (160 aa)
initn: 815 init1: 815 opt: 820 Z-score: 1007.6 bits: 193.4 E(32554): 8.4e-50
Smith-Waterman score: 896; 62.7% identity (62.7% similar) in 255 aa overlap (11-265:1-160)
10 20 30 40 50 60
pF1KB7 MPSLPHSHRVMLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVH
::::::::::::::::::::::::::::::::::::::::
CCDS58 MLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQT----------
10 20 30 40
70 80 90 100 110 120
pF1KB7 PEYWTKRHVWEWLQFCCDQYKLDTNCISFCNFNISGLQLCSMTQEEFVEAAGLCGEYLYF
CCDS58 ------------------------------------------------------------
130 140 150 160 170 180
pF1KB7 ILQNIRTQGYSFFNDAEESKATIKDYADSNCLKTSGIKSQDCHSHSRTSLQSSHLWEFVR
:: :::::::::::::::::::::::::::::::::
CCDS58 --------------DA-----------DSNCLKTSGIKSQDCHSHSRTSLQSSHLWEFVR
50 60 70
190 200 210 220 230 240
pF1KB7 DLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTG
80 90 100 110 120 130
250 260
pF1KB7 ILERVDRRLVYKFGKNAHGWQEDKL
:::::::::::::::::::::::::
CCDS58 ILERVDRRLVYKFGKNAHGWQEDKL
140 150 160
>>CCDS55753.1 EHF gene_id:26298|Hs108|chr11 (277 aa)
initn: 764 init1: 372 opt: 479 Z-score: 588.8 bits: 116.7 E(32554): 1.8e-26
Smith-Waterman score: 738; 44.6% identity (70.8% similar) in 260 aa overlap (32-264:23-276)
10 20 30 40 50 60
pF1KB7 PSLPHSHRVMLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVHP
.::: .:. . .: . : .::
CCDS55 MILEGGGVMNLNPGNNLLHQPPAWTDSYSTCNVSSGF-----FGGQWHEIHP
10 20 30 40
70 80 90 100 110 120
pF1KB7 EYWTKRHVWEWLQFCCDQYKLDTNCISFCNFNISGLQLCSMTQEEFVEAAGLCGEYLYFI
.:::: .:::::: : .::.::: : .:.:.: .::::. .::..::: :. ::
CCDS55 QYWTKYQVWEWLQHLLDTNQLDANCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSN
50 60 70 80 90 100
130 140 150
pF1KB7 LQNIRTQGY---SFFNDA-------EESKATIKD-YADSNCLKTSGI-----------KS
::... .: ..:... :... .: . . : : : .. :
CCDS55 LQHLKWNGQCSSDLFQSTHNVIVKTEQTEPSIMNTWKDENYLYDTNYGSTVAESPDMKKE
110 120 130 140 150 160
160 170 180 190 200 210
pF1KB7 QD----CHSHSRTSLQSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMW
:: ::..... ...:::::.::.::.:..: :...:::: .:.:: .::::.:..:
CCDS55 QDPPAKCHTKKHNP-RGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFRFLKSEAVAQLW
170 180 190 200 210 220
220 230 240 250 260
pF1KB7 GQRKKNDRMTYEKLSRALRYYYKTGILERVD-RRLVYKFGKNAHGWQEDKL
:..:.:. :::::::::.::::: :::::: :::::::::::.::.:..
CCDS55 GKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENEN
230 240 250 260 270
>>CCDS7894.1 EHF gene_id:26298|Hs108|chr11 (300 aa)
initn: 748 init1: 372 opt: 479 Z-score: 588.3 bits: 116.7 E(32554): 1.9e-26
Smith-Waterman score: 696; 42.4% identity (65.7% similar) in 283 aa overlap (32-264:23-299)
10 20 30 40 50 60
pF1KB7 PSLPHSHRVMLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVHP
.::: .:. . .: . : .::
CCDS78 MILEGGGVMNLNPGNNLLHQPPAWTDSYSTCNVSSGF-----FGGQWHEIHP
10 20 30 40
70 80 90 100 110 120
pF1KB7 EYWTKRHVWEWLQFCCDQYKLDTNCISFCNFNISGLQLCSMTQEEFVEAAGLCGEYLYFI
.:::: .:::::: : .::.::: : .:.:.: .::::. .::..::: :. ::
CCDS78 QYWTKYQVWEWLQHLLDTNQLDANCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSN
50 60 70 80 90 100
130 140 150
pF1KB7 LQNIRTQGY---SFFNDA-------EESKATI----KDYA---DSN-------------C
::... .: ..:... :... .: :: :.: :
CCDS78 LQHLKWNGQCSSDLFQSTHNVIVKTEQTEPSIMNTWKDENYLYDTNYGSTVDLLDSKTFC
110 120 130 140 150 160
160 170 180 190
pF1KB7 ------LKTSGI---------KSQD----CHSHSRTSLQSSHLWEFVRDLLLSPEENCGI
:: . : :: ::..... ...:::::.::.::.:..: :.
CCDS78 RAQISMTTTSHLPVAESPDMKKEQDPPAKCHTKKHNP-RGTHLWEFIRDILLNPDKNPGL
170 180 190 200 210 220
200 210 220 230 240 250
pF1KB7 LEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD-RRLVY
..:::: .:.:: .::::.:..::..:.:. :::::::::.::::: :::::: :::::
CCDS78 IKWEDRSEGVFRFLKSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVY
230 240 250 260 270 280
260
pF1KB7 KFGKNAHGWQEDKL
::::::.::.:..
CCDS78 KFGKNARGWRENEN
290 300
>>CCDS55752.1 EHF gene_id:26298|Hs108|chr11 (322 aa)
initn: 748 init1: 372 opt: 479 Z-score: 587.8 bits: 116.7 E(32554): 2e-26
Smith-Waterman score: 696; 42.4% identity (65.7% similar) in 283 aa overlap (32-264:45-321)
10 20 30 40 50 60
pF1KB7 PSLPHSHRVMLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVHP
.::: .:. . .: . : .::
CCDS55 LAEILFKIMILEGGGVMNLNPGNNLLHQPPAWTDSYSTCNVSSGF-----FGGQWHEIHP
20 30 40 50 60
70 80 90 100 110 120
pF1KB7 EYWTKRHVWEWLQFCCDQYKLDTNCISFCNFNISGLQLCSMTQEEFVEAAGLCGEYLYFI
.:::: .:::::: : .::.::: : .:.:.: .::::. .::..::: :. ::
CCDS55 QYWTKYQVWEWLQHLLDTNQLDANCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSN
70 80 90 100 110 120
130 140 150
pF1KB7 LQNIRTQGY---SFFNDA-------EESKATI----KDYA---DSN-------------C
::... .: ..:... :... .: :: :.: :
CCDS55 LQHLKWNGQCSSDLFQSTHNVIVKTEQTEPSIMNTWKDENYLYDTNYGSTVDLLDSKTFC
130 140 150 160 170 180
160 170 180 190
pF1KB7 ------LKTSGI---------KSQD----CHSHSRTSLQSSHLWEFVRDLLLSPEENCGI
:: . : :: ::..... ...:::::.::.::.:..: :.
CCDS55 RAQISMTTTSHLPVAESPDMKKEQDPPAKCHTKKHNP-RGTHLWEFIRDILLNPDKNPGL
190 200 210 220 230 240
200 210 220 230 240 250
pF1KB7 LEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD-RRLVY
..:::: .:.:: .::::.:..::..:.:. :::::::::.::::: :::::: :::::
CCDS55 IKWEDRSEGVFRFLKSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVY
250 260 270 280 290 300
260
pF1KB7 KFGKNAHGWQEDKL
::::::.::.:..
CCDS55 KFGKNARGWRENEN
310 320
>>CCDS1419.1 ELF3 gene_id:1999|Hs108|chr1 (371 aa)
initn: 481 init1: 368 opt: 465 Z-score: 569.8 bits: 113.6 E(32554): 2e-25
Smith-Waterman score: 465; 58.3% identity (87.0% similar) in 108 aa overlap (161-265:259-366)
140 150 160 170 180
pF1KB7 SFFNDAEESKATIKDYADSNCLKTSGIKSQDC--HSHSRTSLQSSHLWEFVRDLLLSPEE
:: ..:. . ...:::::.::.:. ::
CCDS14 SDGFRDCKKGDPKHGKRKRGRPRKLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPEL
230 240 250 260 270 280
190 200 210 220 230 240
pF1KB7 NCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD-R
: :...::.:..:.:. ..:::.:..:::.:::. :::::::::.::::: :::::: :
CCDS14 NEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGR
290 300 310 320 330 340
250 260
pF1KB7 RLVYKFGKNAHGWQEDKL
:::::::::. ::.:...
CCDS14 RLVYKFGKNSSGWKEEEVLQSRN
350 360 370
>>CCDS4794.1 SPDEF gene_id:25803|Hs108|chr6 (335 aa)
initn: 324 init1: 261 opt: 331 Z-score: 407.4 bits: 83.4 E(32554): 2.3e-16
Smith-Waterman score: 392; 33.3% identity (60.9% similar) in 207 aa overlap (49-253:135-331)
20 30 40 50 60 70
pF1KB7 TFLPNASFCDPLMSWTDLFSNEEYYPAFEHQTACDSYWTSVHPEYWTKRHVWEWLQFCCD
.::: .. : :. .: .:: .
CCDS47 LDLVPGGLTLEEHSLEQVQSMVVGEVLKDIETACKLLNITADPMDWSPSNVQKWLLWTEH
110 120 130 140 150 160
80 90 100 110 120 130
pF1KB7 QYKLDTNCISFCNFNISGLQLCSMTQEEFVEAAGLCGEYLYFILQNIRTQGYSFFNDAEE
::.: .: ...: .::.:..:.: . . : :. :. :. ....:
CCDS47 QYRLPPMGKAFQ--ELAGKELCAMSEEQFRQRSPLGGDVLHAHLD--------IWKSAAW
170 180 190 200 210
140 150 160 170 180 190
pF1KB7 SKATIKDYADSNCLKTSGIKSQDCHSHSRTSLQSSHLWEFVRDLLLSPEENCGILEWEDR
: . : : .:: . : . : : : :::.:...:::.:. ...: ..
CCDS47 MKERTSPGAIHYCASTSEESWTDSEVDSSCSGQPIHLWQFLKELLLKPHSYGRFIRWLNK
220 230 240 250 260 270
200 210 220 230 240 250
pF1KB7 EQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD--RRLVYKFGKN
:.:::.. : .:..:: ::. :.:.::::..: ::: ::... : .::::.:
CCDS47 EKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQFVHP
280 290 300 310 320 330
260
pF1KB7 AHGWQEDKL
CCDS47 I
>>CCDS64063.1 ELF2 gene_id:1998|Hs108|chr4 (504 aa)
initn: 274 init1: 246 opt: 286 Z-score: 349.8 bits: 73.3 E(32554): 3.6e-13
Smith-Waterman score: 286; 42.7% identity (76.4% similar) in 110 aa overlap (148-253:92-200)
120 130 140 150 160 170
pF1KB7 LYFILQNIRTQGYSFFNDAEESKATIKDYADSNCLKTSGIK-SQDCHS-HSRTSLQSSHL
.:. . :: : : : : .. . ....:
CCDS64 VPPCVSTPEFIHAAMRPDVITETVVEVSTEESEPMDTSPIPTSPDSHEPMKKKKGNTTYL
70 80 90 100 110 120
180 190 200 210 220 230
pF1KB7 WEFVRDLLLSPEENCG-ILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALR
:::. ::: . ...: ..: .::.:::..: :.:..:.::..:.. :.:: ..::::
CCDS64 WEFLLDLL-QDKNTCPRYIKWTQREKGIFKLVDSKAVSKLWGKHKNKPDMNYETMGRALR
130 140 150 160 170 180
240 250 260
pF1KB7 YYYKTGILERVD-RRLVYKFGKNAHGWQEDKL
:::. ::: .:. .::::.:
CCDS64 YYYQRGILAKVEGQRLVYQFKDMPKNIVVIDDDKSETCNEDLAGTTDEKSLERVSLSAES
190 200 210 220 230 240
265 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:17:02 2016 done: Sat Nov 5 10:17:02 2016
Total Scan time: 2.190 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]