FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4330, 338 aa 1>>>pF1KE4330 338 - 338 aa - 338 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7385+/-0.000385; mu= 13.7199+/- 0.024 mean_var=68.4519+/-13.974, 0's: 0 Z-trim(112.6): 15 B-trim: 19 in 1/49 Lambda= 0.155018 statistics sampled from 21528 (21535) to 21528 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.252), width: 16 Scan time: 6.360 The best scores are: opt bits E(85289) NP_006205 (OMIM: 266500,602026) phytanoyl-CoA diox ( 338) 2304 524.4 1.4e-148 NP_001310011 (OMIM: 266500,602026) phytanoyl-CoA d ( 340) 2290 521.2 1.2e-147 NP_001310009 (OMIM: 266500,602026) phytanoyl-CoA d ( 238) 1653 378.7 6.8e-105 NP_001032626 (OMIM: 266500,602026) phytanoyl-CoA d ( 238) 1653 378.7 6.8e-105 NP_001310013 (OMIM: 266500,602026) phytanoyl-CoA d ( 240) 1639 375.6 6e-104 NP_001310012 (OMIM: 266500,602026) phytanoyl-CoA d ( 250) 901 210.5 3e-54 >>NP_006205 (OMIM: 266500,602026) phytanoyl-CoA dioxygen (338 aa) initn: 2304 init1: 2304 opt: 2304 Z-score: 2788.5 bits: 524.4 E(85289): 1.4e-148 Smith-Waterman score: 2304; 100.0% identity (100.0% similar) in 338 aa overlap (1-338:1-338) 10 20 30 40 50 60 pF1KE4 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 FPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 FPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI 250 260 270 280 290 300 310 320 330 pF1KE4 EKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL :::::::::::::::::::::::::::::::::::::: NP_006 EKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL 310 320 330 >>NP_001310011 (OMIM: 266500,602026) phytanoyl-CoA dioxy (340 aa) initn: 2290 init1: 1207 opt: 2290 Z-score: 2771.6 bits: 521.2 E(85289): 1.2e-147 Smith-Waterman score: 2290; 99.4% identity (99.4% similar) in 340 aa overlap (1-338:1-340) 10 20 30 40 50 60 pF1KE4 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSG--KKTSRHPLHQDL :::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: NP_001 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGNCKKTSRHPLHQDL 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE4 HYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQD 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE4 YEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQE 250 260 270 280 290 300 300 310 320 330 pF1KE4 NIEKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL :::::::::::::::::::::::::::::::::::::::: NP_001 NIEKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL 310 320 330 340 >>NP_001310009 (OMIM: 266500,602026) phytanoyl-CoA dioxy (238 aa) initn: 1653 init1: 1653 opt: 1653 Z-score: 2004.1 bits: 378.7 E(85289): 6.8e-105 Smith-Waterman score: 1653; 100.0% identity (100.0% similar) in 238 aa overlap (101-338:1-238) 80 90 100 110 120 130 pF1KE4 NLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKEL :::::::::::::::::::::::::::::: NP_001 MRDVTISKSEYAPSEKMITKVQDFQEDKEL 10 20 30 140 150 160 170 180 190 pF1KE4 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIV 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE4 CAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVM 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE4 EKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIAHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIAHK 160 170 180 190 200 210 320 330 pF1KE4 FFGAENSVNLKDIWMFRARLVKGERTNL :::::::::::::::::::::::::::: NP_001 FFGAENSVNLKDIWMFRARLVKGERTNL 220 230 >>NP_001032626 (OMIM: 266500,602026) phytanoyl-CoA dioxy (238 aa) initn: 1653 init1: 1653 opt: 1653 Z-score: 2004.1 bits: 378.7 E(85289): 6.8e-105 Smith-Waterman score: 1653; 100.0% identity (100.0% similar) in 238 aa overlap (101-338:1-238) 80 90 100 110 120 130 pF1KE4 NLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKEL :::::::::::::::::::::::::::::: NP_001 MRDVTISKSEYAPSEKMITKVQDFQEDKEL 10 20 30 140 150 160 170 180 190 pF1KE4 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIV 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE4 CAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVM 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE4 EKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIAHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIAHK 160 170 180 190 200 210 320 330 pF1KE4 FFGAENSVNLKDIWMFRARLVKGERTNL :::::::::::::::::::::::::::: NP_001 FFGAENSVNLKDIWMFRARLVKGERTNL 220 230 >>NP_001310013 (OMIM: 266500,602026) phytanoyl-CoA dioxy (240 aa) initn: 1639 init1: 1207 opt: 1639 Z-score: 1987.1 bits: 375.6 E(85289): 6e-104 Smith-Waterman score: 1639; 99.2% identity (99.2% similar) in 240 aa overlap (101-338:1-240) 80 90 100 110 120 130 pF1KE4 NLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKEL :::::::::::::::::::::::::::::: NP_001 MRDVTISKSEYAPSEKMITKVQDFQEDKEL 10 20 30 140 150 160 170 180 pF1KE4 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSG--KKTSRHPLHQDLHYFPFRPSDL :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: NP_001 FRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGNCKKTSRHPLHQDLHYFPFRPSDL 40 50 60 70 80 90 190 200 210 220 230 240 pF1KE4 IVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHL 100 110 120 130 140 150 250 260 270 280 290 300 pF1KE4 VMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIA 160 170 180 190 200 210 310 320 330 pF1KE4 HKFFGAENSVNLKDIWMFRARLVKGERTNL :::::::::::::::::::::::::::::: NP_001 HKFFGAENSVNLKDIWMFRARLVKGERTNL 220 230 240 >>NP_001310012 (OMIM: 266500,602026) phytanoyl-CoA dioxy (250 aa) initn: 901 init1: 901 opt: 901 Z-score: 1094.9 bits: 210.5 E(85289): 3e-54 Smith-Waterman score: 1475; 74.0% identity (74.0% similar) in 338 aa overlap (1-338:1-250) 10 20 30 40 50 60 pF1KE4 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHY :::::::::::::::::: NP_001 VQDFQEDKELFRYCTLPE------------------------------------------ 130 190 200 210 220 230 240 pF1KE4 FPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYE :::::::::::::: NP_001 ----------------------------------------------GGVNKMFHGIQDYE 140 150 250 260 270 280 290 300 pF1KE4 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI 160 170 180 190 200 210 310 320 330 pF1KE4 EKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL :::::::::::::::::::::::::::::::::::::: NP_001 EKEVVGIAHKFFGAENSVNLKDIWMFRARLVKGERTNL 220 230 240 250 338 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:08:57 2016 done: Sat Nov 5 23:08:58 2016 Total Scan time: 6.360 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]