FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1463, 150 aa 1>>>pF1KE1463 150 - 150 aa - 150 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8126+/-0.000639; mu= 14.1778+/- 0.038 mean_var=55.7673+/-11.217, 0's: 0 Z-trim(110.2): 13 B-trim: 0 in 0/51 Lambda= 0.171745 statistics sampled from 11390 (11402) to 11390 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.35), width: 16 Scan time: 1.760 The best scores are: opt bits E(32554) CCDS34316.1 LTC4S gene_id:4056|Hs108|chr5 ( 150) 964 246.2 5.7e-66 CCDS3749.1 MGST2 gene_id:4258|Hs108|chr4 ( 147) 408 108.4 1.7e-24 CCDS9337.1 ALOX5AP gene_id:241|Hs108|chr13 ( 161) 255 70.5 4.7e-13 CCDS73558.1 ALOX5AP gene_id:241|Hs108|chr13 ( 218) 255 70.6 6e-13 >>CCDS34316.1 LTC4S gene_id:4056|Hs108|chr5 (150 aa) initn: 964 init1: 964 opt: 964 Z-score: 1297.8 bits: 246.2 E(32554): 5.7e-66 Smith-Waterman score: 964; 99.3% identity (100.0% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE1 MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 PLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVA 70 80 90 100 110 120 130 140 150 pF1KE1 LAALGLLAHFLPAALRAALLGQLRTLLPWA :::::::::::::::::::::.:::::::: CCDS34 LAALGLLAHFLPAALRAALLGRLRTLLPWA 130 140 150 >>CCDS3749.1 MGST2 gene_id:4258|Hs108|chr4 (147 aa) initn: 406 init1: 406 opt: 408 Z-score: 553.4 bits: 108.4 E(32554): 1.7e-24 Smith-Waterman score: 408; 45.1% identity (70.8% similar) in 144 aa overlap (1-144:1-144) 10 20 30 40 50 60 pF1KE1 MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYF : . :::::..:.. :.::.::: .:: ..:.:: .:: ::::::.::: :: :.. CCDS37 MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNCVEFY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVA :.:. :::.:: .:.. :. ::::...: :: ::...:. :.. . : : ::. CCDS37 PIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILALLTL 70 80 90 100 110 120 130 140 150 pF1KE1 LAALGLLAHFLPAALRAALLGQLRTLLPWA :.:::. :: : . .:: CCDS37 LGALGIANSFLDEYLDLNIAKKLRRQF 130 140 >>CCDS9337.1 ALOX5AP gene_id:241|Hs108|chr13 (161 aa) initn: 253 init1: 240 opt: 255 Z-score: 347.9 bits: 70.5 E(32554): 4.7e-13 Smith-Waterman score: 255; 36.7% identity (64.1% similar) in 128 aa overlap (5-131:9-135) 10 20 30 40 50 pF1KE1 MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNC :.::: :::..:. ...:. .: :. :: ::::: :. :: CCDS93 MDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNC 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 SEYFPLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYA-SARAL . .: :::.:: ::.. . ::. ::.:::.: .:: :: . . . .: : . : . CCDS93 VDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYL-GERTQSTPGYIFGKRII 70 80 90 100 110 120 130 140 150 pF1KE1 WLLVALAALGLLAHFLPAALRAALLGQLRTLLPWA .: ... :.. ..: CCDS93 LFLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISPLLLIP 120 130 140 150 160 >>CCDS73558.1 ALOX5AP gene_id:241|Hs108|chr13 (218 aa) initn: 240 init1: 240 opt: 255 Z-score: 346.0 bits: 70.6 E(32554): 6e-13 Smith-Waterman score: 255; 36.7% identity (64.1% similar) in 128 aa overlap (5-131:66-192) 10 20 30 pF1KE1 MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFR :.::: :::..:. ...:. .: :. CCDS73 HQCWAGCAAGGRAVLSGEPEANMDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRTQN 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE1 VSPPLTTGPPEFERVYRAQVNCSEYFPLFLATLWVAGIFFHEGAAALCGLVYLFARLRYF :: ::::: :. :: . .: :::.:: ::.. . ::. ::.:::.: .:: CCDS73 GRSFQRTGTLAFERVYTANQNCVDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYF 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE1 QGYARSAQLRLAPLYA-SARALWLLVALAALGLLAHFLPAALRAALLGQLRTLLPWA :: . . . .: : . : . .: ... :.. ..: CCDS73 VGYL-GERTQSTPGYIFGKRIILFLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISPL 160 170 180 190 200 210 CCDS73 LLIP 150 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:17:10 2016 done: Mon Nov 7 00:17:11 2016 Total Scan time: 1.760 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]